1,3c1,6
< ALI_L2_R1_001.cln_trinity.Trinity.fasta
< ALI_L2_R1_001.cln_trinity.Trinity_longest.fasta
< AMO_L4_R1_001.cln_trinity.Trinity.fasta
---
> Erysimum_cheiranthoides_v1.0.fa
> Erysimum_cheiranthoides_v1.0_maker_all.cda
> Erysimum_cheiranthoides_v1.0_maker_all.cds
> Erysimum_cheiranthoides_v1.0_maker_all.pep
> Erysimum_cheiranthoides_isoseq_quivered_hq.fasta
> Erysimum_cheiranthoides_isoseq_quivered_lq.fasta
5d7
< ASP_L4_R1_001.cln_trinity.Trinity.fasta
7,10d8
< BAS_L2_R1_001.cln_trinity.Trinity.fasta
< BAS_L2_R1_001.cln_trinity.Trinity_longest.fasta
< BIC_L4_R1_001.cln_trinity.Trinity.fasta
< BIC_L4_R1_001.cln_trinity.Trinity_longest.fasta
12,15c10,14
< CHR4_L2_R1_001.cln_trinity.Trinity.fasta
< CHR4_L2_R1_001.cln_trinity.Trinity_longest.fasta
< CRA_L3_R1_001.cln_trinity.Trinity.fasta
< CRA_L3_R1_001.cln_trinity.Trinity_longest.fasta
---
> NAX_L2_R1_001.cln_trinity.Trinity.fasta
> PAS_L2_R1_001.cln_trinity.Trinity.fasta
> PUL_L2_R1_001.cln_trinity.Trinity.fasta
> RHA_L2_R1_001.cln_trinity.Trinity.fasta
> SYL_L2_R1_001.cln_trinity.Trinity.fasta
17,34d15
< CSS_L2_R1_001.cln_trinity.Trinity.fasta
< CSS_L2_R1_001.cln_trinity.Trinity_longest.fasta
< CUS2_L2_R1_001.cln_trinity.Trinity.fasta
< CUS2_L2_R1_001.cln_trinity.Trinity_longest.fasta
< DIF2_L2_R1_001.cln_trinity.Trinity.fasta
< DIF2_L2_R1_001.cln_trinity.Trinity_longest.fasta
< EC1_1_gffread_cds_Nov_2018
< EC1_1_gffread_cds_Nov_2018.nhr
< EC1_1_gffread_cds_Nov_2018.nin
< EC1_1_gffread_cds_Nov_2018.nsd
< EC1_1_gffread_cds_Nov_2018.nsi
< EC1_1_gffread_cds_Nov_2018.nsq
< EC1_1_gffread_exon_Nov_2018
< EC1_1_gffread_exon_Nov_2018.nhr
< EC1_1_gffread_exon_Nov_2018.nin
< EC1_1_gffread_exon_Nov_2018.nsd
< EC1_1_gffread_exon_Nov_2018.nsi
< EC1_1_gffread_exon_Nov_2018.nsq
36,75d16
< Erysimum_cheiranthoides_isoseq_quivered_hq.fasta
< Erysimum_cheiranthoides_isoseq_quivered_lq.fasta
< Erysimum_cheiranthoides_v1.0.cds.nhr
< Erysimum_cheiranthoides_v1.0.cds.nin
< Erysimum_cheiranthoides_v1.0.cds.nsq
< Erysimum_cheiranthoides_v1.0.fa
< Erysimum_cheiranthoides_v1.0.fa.fai
< Erysimum_cheiranthoides_v1.0.fa.nhr
< Erysimum_cheiranthoides_v1.0.fa.nin
< Erysimum_cheiranthoides_v1.0.fa.nsd
< Erysimum_cheiranthoides_v1.0.fa.nsi
< Erysimum_cheiranthoides_v1.0.fa.nsq
< Erysimum_cheiranthoides_v1.0_maker_all.cdna
< Erysimum_cheiranthoides_v1.0_maker_all.cdna.nhr
< Erysimum_cheiranthoides_v1.0_maker_all.cdna.nin
< Erysimum_cheiranthoides_v1.0_maker_all.cdna.nsd
< Erysimum_cheiranthoides_v1.0_maker_all.cdna.nsi
< Erysimum_cheiranthoides_v1.0_maker_all.cdna.nsq
< Erysimum_cheiranthoides_v1.0_maker_all.cds
< Erysimum_cheiranthoides_v1.0_maker_all.cds.nhr
< Erysimum_cheiranthoides_v1.0_maker_all.cds.nin
< Erysimum_cheiranthoides_v1.0_maker_all.cds.nsd
< Erysimum_cheiranthoides_v1.0_maker_all.cds.nsi
< Erysimum_cheiranthoides_v1.0_maker_all.cds.nsq
< Erysimum_cheiranthoides_v1.0_maker_all.gff3
< Erysimum_cheiranthoides_v1.0_maker_all.pep
< Erysimum_cheiranthoides_v1.0_maker_all.pep.phr
< Erysimum_cheiranthoides_v1.0_maker_all.pep.pin
< Erysimum_cheiranthoides_v1.0_maker_all.pep.psd
< Erysimum_cheiranthoides_v1.0_maker_all.pep.psi
< Erysimum_cheiranthoides_v1.0_maker_all.pep.psq
< Erysimum_cheiranthoides_v1_0.cds.nhr
< Erysimum_cheiranthoides_v1_0.cds.nin
< Erysimum_cheiranthoides_v1_0.cds.nsq
< Erysimum_cheiranthoides_v1_0.fa
< Erysimum_cheiranthoides_v1_0.fa.nhr
< Erysimum_cheiranthoides_v1_0.fa.nin
< Erysimum_cheiranthoides_v1_0.fa.nsq
< FIZ_L3_R1_001.cln_trinity.Trinity.fasta
< FIZ_L3_R1_001.cln_trinity.Trinity_longest.fasta
77,78d17
< HIE1_L4_R1_001.cln_trinity.Trinity.fasta
< HIE1_L4_R1_001.cln_trinity.Trinity_longest.fasta
80,85d18
< HUN_L4_R1_001.cln_trinity.Trinity.fasta
< HUN_L4_R1_001.cln_trinity.Trinity_longest.fasta
< INC_L4_R1_001.cln_trinity.Trinity.fasta
< INC_L4_R1_001.cln_trinity.Trinity_longest.fasta
< KOT_L3_R1_001.cln_trinity.Trinity.fasta
< KOT_L3_R1_001.cln_trinity.Trinity_longest.fasta
87,94d19
< MAJ_L4_R1_001.cln_trinity.Trinity.fasta
< MED_L3_R1_001.cln_trinity.Trinity.fasta
< MED_L3_R1_001.cln_trinity.Trinity_longest.fasta
< MEX_L3_R1_001.cln_trinity.Trinity.fasta
< MEX_L3_R1_001.cln_trinity.Trinity_longest.fasta
< MEZ_L4_R1_001.cln_trinity.Trinity.fasta
< MIC_L4_R1_001.cln_trinity.Trinity.fasta
< NAX_L2_R1_001.cln_trinity.Trinity.fasta
96,97d20
< NEV_L2_R1_001.cln_trinity.Trinity.fasta
< NEV_L2_R1_001.cln_trinity.Trinity_longest.fasta
99,111d21
< PAS_L2_R1_001.cln_trinity.Trinity.fasta
< PIE2_L2_R1_001.cln_trinity.Trinity.fasta
< PIE2_L2_R1_001.cln_trinity.Trinity_longest.fasta
< PSE_L4_R1_001.cln_trinity.Trinity.fasta
< PSE_L4_R1_001.cln_trinity.Trinity_longest.fasta
< PUL2_L3_R1_001.cln_trinity.Trinity.fasta
< PUL2_L3_R1_001.cln_trinity.Trinity_longest.fasta
< PUL_L2_R1_001.cln_trinity.Trinity.fasta
< REP_L4_R1_001.cln_trinity.Trinity.fasta
< REP_L4_R1_001.cln_trinity.Trinity_longest.fasta
< RHA3_L3_R1_001.cln_trinity.Trinity.fasta
< RHA3_L3_R1_001.cln_trinity.Trinity_longest.fasta
< RHA_L2_R1_001.cln_trinity.Trinity.fasta
112a23,27
> AMO_L4_R1_001.cln_trinity.Trinity.fasta
> ASP_L4_R1_001.cln_trinity.Trinity.fasta
> MAJ_L4_R1_001.cln_trinity.Trinity.fasta
> MEZ_L4_R1_001.cln_trinity.Trinity.fasta
> MIC_L4_R1_001.cln_trinity.Trinity.fasta
115,121d29
< SUF_L3_R1_001.cln_trinity.Trinity.fasta
< SUF_L3_R1_001.cln_trinity.Trinity_longest.fasta
< SYL_L2_R1_001.cln_trinity.Trinity.fasta
< VIR2_L4_R1_001.cln_trinity.Trinity.fasta
< VIR2_L4_R1_001.cln_trinity.Trinity_longest.fasta
< WIC_L4_R1_001.cln_trinity.Trinity.fasta
< WIC_L4_R1_001.cln_trinity.Trinity_longest.fasta
123,128c31,32
< formatdb.log
< ls_blast.txt
< mylog
< sgn_blast.txt
< sgn_blast.txt.sorted
< test.fasta
---
> EC1_1_gffread_cds_Nov_2018
> EC1_1_gffread_exon_Nov_2018