BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=21
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g033540.1.mRNA1.mrna1gene=Erche07g033540.1.mRNA1               39.9    1e-04
Erche07g033480.1.mRNA1.mrna1gene=Erche07g033480.1.mRNA1               39.9    1e-04
Erche07g033470.1.mRNA1.mrna1gene=Erche07g033470.1.mRNA1               39.9    1e-04
Erche01g039770.1.mRNA1.mrna1gene=Erche01g039770.1.mRNA1               30.7    0.065
Erche05g018720.1.mRNA1.mrna1gene=Erche05g018720.1.mRNA1               28.8    0.23 
Erche01g042660.1.mRNA1.mrna1gene=Erche01g042660.1.mRNA1               28.8    0.23 
Erche02g021110.1.mRNA1.mrna1gene=Erche02g021110.1.mRNA1               27.0    0.84 
Erche02g020360.1.mRNA1.mrna1gene=Erche02g020360.1.mRNA1               27.0    0.84 


>Erche07g033540.1.mRNA1.mrna1 gene=Erche07g033540.1.mRNA1
Length=1632

 Score = 39.9 bits (21),  Expect = 1e-04
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  1    TGCTGGACAAACAATCTCCGT  21
            |||||||||||||||||||||
Sbjct  504  TGCTGGACAAACAATCTCCGT  484


>Erche07g033480.1.mRNA1.mrna1 gene=Erche07g033480.1.mRNA1
Length=1386

 Score = 39.9 bits (21),  Expect = 1e-04
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  1    TGCTGGACAAACAATCTCCGT  21
            |||||||||||||||||||||
Sbjct  297  TGCTGGACAAACAATCTCCGT  277


>Erche07g033470.1.mRNA1.mrna1 gene=Erche07g033470.1.mRNA1
Length=456

 Score = 39.9 bits (21),  Expect = 1e-04
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  1    TGCTGGACAAACAATCTCCGT  21
            |||||||||||||||||||||
Sbjct  111  TGCTGGACAAACAATCTCCGT  91


>Erche01g039770.1.mRNA1.mrna1 gene=Erche01g039770.1.mRNA1
Length=2100

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 19/20 (95%), Gaps = 1/20 (5%)
 Strand=Plus/Minus

Query  1     TGC-TGGACAAACAATCTCC  19
             ||| ||||||||||||||||
Sbjct  2059  TGCTTGGACAAACAATCTCC  2040


>Erche05g018720.1.mRNA1.mrna1 gene=Erche05g018720.1.mRNA1
Length=2094

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  2    GCTGGACAAACAATC  16
            |||||||||||||||
Sbjct  410  GCTGGACAAACAATC  396


>Erche01g042660.1.mRNA1.mrna1 gene=Erche01g042660.1.mRNA1
Length=2982

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  1     TGCTGGACAAACAAT  15
             |||||||||||||||
Sbjct  1110  TGCTGGACAAACAAT  1096


>Erche02g021110.1.mRNA1.mrna1 gene=Erche02g021110.1.mRNA1
Length=1281

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6     GACAAACAATCTCC  19
             ||||||||||||||
Sbjct  1134  GACAAACAATCTCC  1147


>Erche02g020360.1.mRNA1.mrna1 gene=Erche02g020360.1.mRNA1
Length=1452

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  1    TGCTGGACAAACAA  14
            ||||||||||||||
Sbjct  290  TGCTGGACAAACAA  277



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111175668


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5