BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche08g007620.1.mRNA1.mrna1gene=Erche08g007620.1.mRNA1               38.1    4e-04
Erche08g007290.1.mRNA1.mrna1gene=Erche08g007290.1.mRNA1               38.1    4e-04
Erche08g007270.1.mRNA1.mrna1gene=Erche08g007270.1.mRNA1               38.1    4e-04
Erche01g045460.1.mRNA1.mrna1gene=Erche01g045460.1.mRNA1               34.4    0.005
Erche01g045600.1.mRNA1.mrna1gene=Erche01g045600.1.mRNA1               34.4    0.005
Erche01g045610.1.mRNA1.mrna1gene=Erche01g045610.1.mRNA1               34.4    0.005
Erche04g013840.1.mRNA1.mrna1gene=Erche04g013840.1.mRNA1               28.8    0.23 
Erche02g018790.1.mRNA1.mrna1gene=Erche02g018790.1.mRNA1               27.0    0.84 


>Erche08g007620.1.mRNA1.mrna1 gene=Erche08g007620.1.mRNA1
Length=1383

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    CCACACGTGTAGGTACCATG  20
            ||||||||||||||||||||
Sbjct  676  CCACACGTGTAGGTACCATG  657


>Erche08g007290.1.mRNA1.mrna1 gene=Erche08g007290.1.mRNA1
Length=3513

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    CCACACGTGTAGGTACCATG  20
            ||||||||||||||||||||
Sbjct  709  CCACACGTGTAGGTACCATG  690


 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     CCACACGTGTAGGTACCATG  20
             ||||||||||||||||||||
Sbjct  2833  CCACACGTGTAGGTACCATG  2814


>Erche08g007270.1.mRNA1.mrna1 gene=Erche08g007270.1.mRNA1
Length=1413

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    CCACACGTGTAGGTACCATG  20
            ||||||||||||||||||||
Sbjct  706  CCACACGTGTAGGTACCATG  687


>Erche01g045460.1.mRNA1.mrna1 gene=Erche01g045460.1.mRNA1
Length=1542

 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  3    ACACGTGTAGGTACCATG  20
            ||||||||||||||||||
Sbjct  959  ACACGTGTAGGTACCATG  942


>Erche01g045600.1.mRNA1.mrna1 gene=Erche01g045600.1.mRNA1
Length=2358

 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  3    ACACGTGTAGGTACCATG  20
            ||||||||||||||||||
Sbjct  605  ACACGTGTAGGTACCATG  588


 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  3     ACACGTGTAGGTACCATG  20
             ||||||||||||||||||
Sbjct  1787  ACACGTGTAGGTACCATG  1770


>Erche01g045610.1.mRNA1.mrna1 gene=Erche01g045610.1.mRNA1
Length=333

 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  3    ACACGTGTAGGTACCATG  20
            ||||||||||||||||||
Sbjct  149  ACACGTGTAGGTACCATG  132


>Erche04g013840.1.mRNA1.mrna1 gene=Erche04g013840.1.mRNA1
Length=1314

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  3    ACACGTGTAGGTACCATG  20
            |||||||||||||| |||
Sbjct  716  ACACGTGTAGGTACTATG  699


>Erche02g018790.1.mRNA1.mrna1 gene=Erche02g018790.1.mRNA1
Length=1920

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  3    ACACGTGTAGGTAC  16
            ||||||||||||||
Sbjct  662  ACACGTGTAGGTAC  649



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5