BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche01g035760.1.mRNA1.mrna1gene=Erche01g035760.1.mRNA1               36.2    0.001
Erche01g035790.1.mRNA1.mrna1gene=Erche01g035790.1.mRNA1               36.2    0.001
Erche01g035910.1.mRNA1.mrna1gene=Erche01g035910.1.mRNA1               36.2    0.001
Erche03g029150.1.mRNA1.mrna1gene=Erche03g029150.1.mRNA1               28.8    0.23 
Erche02g013520.1.mRNA1.mrna1gene=Erche02g013520.1.mRNA1               28.8    0.23 


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GCAAGCCGGACTGGATGGCG  20
             ||||||||||||||||||||
Sbjct  4546  GCAAGCCGGACTGGATGGCG  4527


>Erche01g035760.1.mRNA1.mrna1 gene=Erche01g035760.1.mRNA1
Length=6111

 Score = 36.2 bits (19),  Expect = 0.001
 Identities = 19/19 (100%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  1     GCAAGCCGGACTGGATGGC  19
             |||||||||||||||||||
Sbjct  1642  GCAAGCCGGACTGGATGGC  1624


 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  1     GCAAGCCGGACTGGATGGC  19
             ||||||| |||||||||||
Sbjct  4171  GCAAGCCAGACTGGATGGC  4153


>Erche01g035790.1.mRNA1.mrna1 gene=Erche01g035790.1.mRNA1
Length=2337

 Score = 36.2 bits (19),  Expect = 0.001
 Identities = 19/19 (100%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  1     GCAAGCCGGACTGGATGGC  19
             |||||||||||||||||||
Sbjct  1072  GCAAGCCGGACTGGATGGC  1054


>Erche01g035910.1.mRNA1.mrna1 gene=Erche01g035910.1.mRNA1
Length=2535

 Score = 36.2 bits (19),  Expect = 0.001
 Identities = 19/19 (100%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  1    GCAAGCCGGACTGGATGGC  19
            |||||||||||||||||||
Sbjct  142  GCAAGCCGGACTGGATGGC  124


>Erche03g029150.1.mRNA1.mrna1 gene=Erche03g029150.1.mRNA1
Length=2616

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  1    GCAAGCCGGACTGGA  15
            |||||||||||||||
Sbjct  589  GCAAGCCGGACTGGA  575


>Erche02g013520.1.mRNA1.mrna1 gene=Erche02g013520.1.mRNA1
Length=1308

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  1    GCAAGCCGGACTGGA  15
            |||||||||||||||
Sbjct  641  GCAAGCCGGACTGGA  655



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5