BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche08g006110.1.mRNA1.mrna1gene=Erche08g006110.1.mRNA1               38.1    4e-04
Erche08g028320.1.mRNA1.mrna1gene=Erche08g028320.1.mRNA1               28.8    0.23 
Erche08g018510.1.mRNA1.mrna1gene=Erche08g018510.1.mRNA1               28.8    0.23 
Erche01g038540.1.mRNA1.mrna1gene=Erche01g038540.1.mRNA1               28.8    0.23 
Erche08g023570.1.mRNA1.mrna1gene=Erche08g023570.1.mRNA1               27.0    0.84 


>Erche08g006110.1.mRNA1.mrna1 gene=Erche08g006110.1.mRNA1
Length=552

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GCTTGTGAAGACGGATAATG  20
            ||||||||||||||||||||
Sbjct  115  GCTTGTGAAGACGGATAATG  96


>Erche08g028320.1.mRNA1.mrna1 gene=Erche08g028320.1.mRNA1
Length=1350

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  1    GCTTGTGAAGACGGATAA  18
            ||||||||||||| ||||
Sbjct  951  GCTTGTGAAGACGAATAA  934


>Erche08g018510.1.mRNA1.mrna1 gene=Erche08g018510.1.mRNA1
Length=1086

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3    TTGTGAAGACGGATAATG  20
            |||||||||||||| |||
Sbjct  443  TTGTGAAGACGGATCATG  460


>Erche01g038540.1.mRNA1.mrna1 gene=Erche01g038540.1.mRNA1
Length=342

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  1    GCTTGTGAAGACGGATAA  18
            ||||||||||| ||||||
Sbjct  303  GCTTGTGAAGAAGGATAA  320


>Erche08g023570.1.mRNA1.mrna1 gene=Erche08g023570.1.mRNA1
Length=1743

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  7     GAAGACGGATAATG  20
             ||||||||||||||
Sbjct  1328  GAAGACGGATAATG  1315



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5