BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche04g006870.1.mRNA1.mrna1gene=Erche04g006870.1.mRNA1               38.1    4e-04
Erche04g006910.1.mRNA1.mrna1gene=Erche04g006910.1.mRNA1               32.5    0.018
Erche05g013830.1.mRNA1.mrna1gene=Erche05g013830.1.mRNA1               30.7    0.065
Erche07g000600.1.mRNA1.mrna1gene=Erche07g000600.1.mRNA1               27.0    0.84 
Erche06g023060.1.mRNA1.mrna1gene=Erche06g023060.1.mRNA1               27.0    0.84 
Erche04g014450.1.mRNA1.mrna1gene=Erche04g014450.1.mRNA1               27.0    0.84 


>Erche04g006870.1.mRNA1.mrna1 gene=Erche04g006870.1.mRNA1
Length=2760

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    ACCAGGCGGTGTCCACCCAT  20
            ||||||||||||||||||||
Sbjct  498  ACCAGGCGGTGTCCACCCAT  479


 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     ACCAGGCGGTGTCCACCCAT  20
             ||||||||||||||||||||
Sbjct  1893  ACCAGGCGGTGTCCACCCAT  1874


>Erche04g006910.1.mRNA1.mrna1 gene=Erche04g006910.1.mRNA1
Length=2280

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     ACCAGGCGGTGTCCACCCAT  20
             ||||||||||||| ||||||
Sbjct  1788  ACCAGGCGGTGTCAACCCAT  1769


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    ACCAGGCGGTGTCCACCCAT  20
            |||||||||| || ||||||
Sbjct  483  ACCAGGCGGTATCAACCCAT  464


>Erche05g013830.1.mRNA1.mrna1 gene=Erche05g013830.1.mRNA1
Length=2067

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  1    ACCAGGCGGTGTCCAC  16
            ||||||||||||||||
Sbjct  918  ACCAGGCGGTGTCCAC  903


>Erche07g000600.1.mRNA1.mrna1 gene=Erche07g000600.1.mRNA1
Length=1380

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  3     CAGGCGGTGTCCAC  16
             ||||||||||||||
Sbjct  1264  CAGGCGGTGTCCAC  1251


>Erche06g023060.1.mRNA1.mrna1 gene=Erche06g023060.1.mRNA1
Length=1098

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    ACCAGGCGGTGTCCACCCAT  20
            ||||||||||||  ||||||
Sbjct  609  ACCAGGCGGTGTTAACCCAT  590


>Erche04g014450.1.mRNA1.mrna1 gene=Erche04g014450.1.mRNA1
Length=1470

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    ACCAGGCGGTGTCCACCCAT  20
            ||||||||||||  ||||||
Sbjct  609  ACCAGGCGGTGTGTACCCAT  590



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5