BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche04g006780.1.mRNA1.mrna1gene=Erche04g006780.1.mRNA1               38.1    4e-04
Erche07g018590.1.mRNA1.mrna1gene=Erche07g018590.1.mRNA1               32.5    0.018
Erche07g022039.1.mRNA1.mrna1gene=Erche07g022039.1.mRNA1               32.5    0.018
Erche08g004140.1.mRNA1.mrna1gene=Erche08g004140.1.mRNA1               25.1    3.0  
Erche03g016150.1.mRNA1.mrna1gene=Erche03g016150.1.mRNA1               25.1    3.0  
Erche02g000520.1.mRNA1.mrna1gene=Erche02g000520.1.mRNA1               25.1    3.0  
Erche01g016860.1.mRNA1.mrna1gene=Erche01g016860.1.mRNA1               25.1    3.0  


>Erche04g006780.1.mRNA1.mrna1 gene=Erche04g006780.1.mRNA1
Length=1818

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    ATCGAAGGGACCACACCGCC  20
            ||||||||||||||||||||
Sbjct  586  ATCGAAGGGACCACACCGCC  605


>Erche07g018590.1.mRNA1.mrna1 gene=Erche07g018590.1.mRNA1
Length=660

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  1    ATCGAAGGGACCACACC  17
            |||||||||||||||||
Sbjct  610  ATCGAAGGGACCACACC  626


>Erche07g022039.1.mRNA1.mrna1 gene=Erche07g022039.1.mRNA1
Length=1419

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  1    ATCGAAGGGACCACACC  17
            |||||||||||||||||
Sbjct  610  ATCGAAGGGACCACACC  626


>Erche08g004140.1.mRNA1.mrna1 gene=Erche08g004140.1.mRNA1
Length=1419

 Score = 25.1 bits (13),  Expect = 3.0
 Identities = 13/13 (100%), Gaps = 0/13 (0%)
 Strand=Plus/Minus

Query  6    AGGGACCACACCG  18
            |||||||||||||
Sbjct  135  AGGGACCACACCG  123


>Erche03g016150.1.mRNA1.mrna1 gene=Erche03g016150.1.mRNA1
Length=819

 Score = 25.1 bits (13),  Expect = 3.0
 Identities = 13/13 (100%), Gaps = 0/13 (0%)
 Strand=Plus/Minus

Query  6    AGGGACCACACCG  18
            |||||||||||||
Sbjct  231  AGGGACCACACCG  219


>Erche02g000520.1.mRNA1.mrna1 gene=Erche02g000520.1.mRNA1
Length=189

 Score = 25.1 bits (13),  Expect = 3.0
 Identities = 15/16 (94%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  4   GAAGGGACCACACCGC  19
           |||| |||||||||||
Sbjct  29  GAAGCGACCACACCGC  14


>Erche01g016860.1.mRNA1.mrna1 gene=Erche01g016860.1.mRNA1
Length=2352

 Score = 25.1 bits (13),  Expect = 3.0
 Identities = 13/13 (100%), Gaps = 0/13 (0%)
 Strand=Plus/Plus

Query  1    ATCGAAGGGACCA  13
            |||||||||||||
Sbjct  146  ATCGAAGGGACCA  158



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5