BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche08g006110.1.mRNA1.mrna1gene=Erche08g006110.1.mRNA1               38.1    4e-04
Erche08g006131.1.mRNA1.mrna1gene=Erche08g006131.1.mRNA1               32.5    0.018
Erche06g008120.1.mRNA1.mrna1gene=Erche06g008120.1.mRNA1               27.0    0.84 
Erche05g030630.1.mRNA1.mrna1gene=Erche05g030630.1.mRNA1               27.0    0.84 
Erche04g031590.1.mRNA1.mrna1gene=Erche04g031590.1.mRNA1               27.0    0.84 
Erche03g010640.1.mRNA1.mrna1gene=Erche03g010640.1.mRNA1               27.0    0.84 
Erche03g019630.1.mRNA1.mrna1gene=Erche03g019630.1.mRNA1               27.0    0.84 
Erche02g010920.1.mRNA1.mrna1gene=Erche02g010920.1.mRNA1               27.0    0.84 
Erche01g040340.1.mRNA1.mrna1gene=Erche01g040340.1.mRNA1               27.0    0.84 


>Erche08g006110.1.mRNA1.mrna1 gene=Erche08g006110.1.mRNA1
Length=552

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GCGGTGATGAACAATGACGG  20
            ||||||||||||||||||||
Sbjct  287  GCGGTGATGAACAATGACGG  268


>Erche08g006131.1.mRNA1.mrna1 gene=Erche08g006131.1.mRNA1
Length=405

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GCGGTGATGAACAATGACGG  20
            |||||||||||||| |||||
Sbjct  158  GCGGTGATGAACAAGGACGG  139


>Erche06g008120.1.mRNA1.mrna1 gene=Erche06g008120.1.mRNA1
Length=834

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  1    GCGGTGATGAACAATGA  17
            ||||||||||| |||||
Sbjct  532  GCGGTGATGAAAAATGA  548


>Erche05g030630.1.mRNA1.mrna1 gene=Erche05g030630.1.mRNA1
Length=1530

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  3    GGTGATGAACAATG  16
            ||||||||||||||
Sbjct  971  GGTGATGAACAATG  958


>Erche04g031590.1.mRNA1.mrna1 gene=Erche04g031590.1.mRNA1
Length=705

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  1    GCGGTGATGAACAA  14
            ||||||||||||||
Sbjct  592  GCGGTGATGAACAA  605


>Erche03g010640.1.mRNA1.mrna1 gene=Erche03g010640.1.mRNA1
Length=651

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  2    CGGTGATGAACAATGAC  18
            |||| ||||||||||||
Sbjct  487  CGGTTATGAACAATGAC  471


>Erche03g019630.1.mRNA1.mrna1 gene=Erche03g019630.1.mRNA1
Length=2037

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  4    GTGATGAACAATGA  17
            ||||||||||||||
Sbjct  943  GTGATGAACAATGA  956


>Erche02g010920.1.mRNA1.mrna1 gene=Erche02g010920.1.mRNA1
Length=1722

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  5    TGATGAACAATGAC  18
            ||||||||||||||
Sbjct  821  TGATGAACAATGAC  808


>Erche01g040340.1.mRNA1.mrna1 gene=Erche01g040340.1.mRNA1
Length=3165

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  1     GCGGTGATGAACAATGA  17
             ||||||||||| |||||
Sbjct  3149  GCGGTGATGAAGAATGA  3165



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5