BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009500.1.mRNA1.mrna1gene=Erche07g009500.1.mRNA1               38.1    4e-04
Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche03g032390.1.mRNA1.mrna1gene=Erche03g032390.1.mRNA1               32.5    0.018
Erche07g018770.1.mRNA1.mrna1gene=Erche07g018770.1.mRNA1               28.8    0.23 
Erche06g028320.1.mRNA1.mrna1gene=Erche06g028320.1.mRNA1               28.8    0.23 
Erche07g021400.1.mRNA1.mrna1gene=Erche07g021400.1.mRNA1               27.0    0.84 
Erche06g008610.1.mRNA1.mrna1gene=Erche06g008610.1.mRNA1               27.0    0.84 
Erche05g023030.1.mRNA1.mrna1gene=Erche05g023030.1.mRNA1               27.0    0.84 
Erche05g022910.1.mRNA1.mrna1gene=Erche05g022910.1.mRNA1               27.0    0.84 
Erche01g011470.1.mRNA1.mrna1gene=Erche01g011470.1.mRNA1               27.0    0.84 


>Erche07g009500.1.mRNA1.mrna1 gene=Erche07g009500.1.mRNA1
Length=1488

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TATGTTTCCACGGGAACTTG  20
            ||||||||||||||||||||
Sbjct  602  TATGTTTCCACGGGAACTTG  583


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TATGTTTCCACGGGAACTTG  20
            ||||||||||||||||||||
Sbjct  521  TATGTTTCCACGGGAACTTG  502


 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     TATGTTTCCACGGGAACTTG  20
             ||||||||||||||||||||
Sbjct  7388  TATGTTTCCACGGGAACTTG  7369


>Erche03g032390.1.mRNA1.mrna1 gene=Erche03g032390.1.mRNA1
Length=2571

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TATGTTTCCACGGGAACTTG  20
            |||||| |||||||||||||
Sbjct  605  TATGTTGCCACGGGAACTTG  586


>Erche07g018770.1.mRNA1.mrna1 gene=Erche07g018770.1.mRNA1
Length=729

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  3    TGTTTCCACGGGAACTTG  20
            |||||| |||||||||||
Sbjct  254  TGTTTCGACGGGAACTTG  237


>Erche06g028320.1.mRNA1.mrna1 gene=Erche06g028320.1.mRNA1
Length=1524

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  2    ATGTTTCCACGGGAACTT  19
            ||||||| ||||||||||
Sbjct  829  ATGTTTCTACGGGAACTT  846


>Erche07g021400.1.mRNA1.mrna1 gene=Erche07g021400.1.mRNA1
Length=1194

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  4    GTTTCCACGGGAACTTG  20
            |||||||| ||||||||
Sbjct  313  GTTTCCACCGGAACTTG  297


>Erche06g008610.1.mRNA1.mrna1 gene=Erche06g008610.1.mRNA1
Length=1920

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  5    TTTCCACGGGAACT  18
            ||||||||||||||
Sbjct  509  TTTCCACGGGAACT  496


>Erche05g023030.1.mRNA1.mrna1 gene=Erche05g023030.1.mRNA1
Length=1638

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  7    TCCACGGGAACTTG  20
            ||||||||||||||
Sbjct  777  TCCACGGGAACTTG  790


>Erche05g022910.1.mRNA1.mrna1 gene=Erche05g022910.1.mRNA1
Length=1596

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  7    TCCACGGGAACTTG  20
            ||||||||||||||
Sbjct  735  TCCACGGGAACTTG  748


>Erche01g011470.1.mRNA1.mrna1 gene=Erche01g011470.1.mRNA1
Length=1383

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  7    TCCACGGGAACTTG  20
            ||||||||||||||
Sbjct  382  TCCACGGGAACTTG  395



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5