BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche05g010030.1.mRNA1.mrna1gene=Erche05g010030.1.mRNA1               28.8    0.23 
Erche08g030890.1.mRNA1.mrna1gene=Erche08g030890.1.mRNA1               27.0    0.84 
Erche07g011310.1.mRNA1.mrna1gene=Erche07g011310.1.mRNA1               27.0    0.84 
Erche03g034130.1.mRNA1.mrna1gene=Erche03g034130.1.mRNA1               27.0    0.84 
Erche03g038590.1.mRNA1.mrna1gene=Erche03g038590.1.mRNA1               27.0    0.84 
Erche02g028440.1.mRNA1.mrna1gene=Erche02g028440.1.mRNA1               27.0    0.84 
Erche02g015540.1.mRNA1.mrna1gene=Erche02g015540.1.mRNA1               27.0    0.84 
Erche01g035760.1.mRNA1.mrna1gene=Erche01g035760.1.mRNA1               27.0    0.84 
Erche01g035790.1.mRNA1.mrna1gene=Erche01g035790.1.mRNA1               27.0    0.84 
Erche01g037200.1.mRNA1.mrna1gene=Erche01g037200.1.mRNA1               27.0    0.84 


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     CTTCAAAGCAAGTAGTGTGT  20
             ||||||||||||||||||||
Sbjct  4656  CTTCAAAGCAAGTAGTGTGT  4675


>Erche05g010030.1.mRNA1.mrna1 gene=Erche05g010030.1.mRNA1
Length=2955

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  5     AAAGCAAGTAGTGTG  19
             |||||||||||||||
Sbjct  1579  AAAGCAAGTAGTGTG  1593


>Erche08g030890.1.mRNA1.mrna1 gene=Erche08g030890.1.mRNA1
Length=1605

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  5     AAAGCAAGTAGTGT  18
             ||||||||||||||
Sbjct  1382  AAAGCAAGTAGTGT  1369


>Erche07g011310.1.mRNA1.mrna1 gene=Erche07g011310.1.mRNA1
Length=2073

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  3    TCAAAGCAAGTAGT  16
            ||||||||||||||
Sbjct  196  TCAAAGCAAGTAGT  183


>Erche03g034130.1.mRNA1.mrna1 gene=Erche03g034130.1.mRNA1
Length=1425

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  1    CTTCAAAGCAAGTA  14
            ||||||||||||||
Sbjct  243  CTTCAAAGCAAGTA  256


>Erche03g038590.1.mRNA1.mrna1 gene=Erche03g038590.1.mRNA1
Length=1941

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  5    AAAGCAAGTAGTGT  18
            ||||||||||||||
Sbjct  350  AAAGCAAGTAGTGT  337


>Erche02g028440.1.mRNA1.mrna1 gene=Erche02g028440.1.mRNA1
Length=2943

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  1     CTTCAAAGCAAGTA  14
             ||||||||||||||
Sbjct  2124  CTTCAAAGCAAGTA  2111


>Erche02g015540.1.mRNA1.mrna1 gene=Erche02g015540.1.mRNA1
Length=1374

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  6   AAGCAAGTAGTGTG  19
           ||||||||||||||
Sbjct  45  AAGCAAGTAGTGTG  32


>Erche01g035760.1.mRNA1.mrna1 gene=Erche01g035760.1.mRNA1
Length=6111

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  1     CTTCAAAGCAAGTA  14
             ||||||||||||||
Sbjct  2982  CTTCAAAGCAAGTA  2995


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  1     CTTCAAAGCAAGTA  14
             ||||||||||||||
Sbjct  4254  CTTCAAAGCAAGTA  4267


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  1     CTTCAAAGCAAGTA  14
             ||||||||||||||
Sbjct  5922  CTTCAAAGCAAGTA  5935


>Erche01g035790.1.mRNA1.mrna1 gene=Erche01g035790.1.mRNA1
Length=2337

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  1     CTTCAAAGCAAGTA  14
             ||||||||||||||
Sbjct  1167  CTTCAAAGCAAGTA  1180


>Erche01g037200.1.mRNA1.mrna1 gene=Erche01g037200.1.mRNA1
Length=1479

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  4     CAAAGCAAGTAGTG  17
             ||||||||||||||
Sbjct  1287  CAAAGCAAGTAGTG  1300



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5