BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g022060.1.mRNA1.mrna1gene=Erche07g022060.1.mRNA1               38.1    4e-04
Erche04g006780.1.mRNA1.mrna1gene=Erche04g006780.1.mRNA1               38.1    4e-04
Erche05g030550.1.mRNA1.mrna1gene=Erche05g030550.1.mRNA1               32.5    0.018
Erche04g025900.1.mRNA1.mrna1gene=Erche04g025900.1.mRNA1               28.8    0.23 
Erche04g031400.1.mRNA1.mrna1gene=Erche04g031400.1.mRNA1               28.8    0.23 
Erche03g010570.1.mRNA1.mrna1gene=Erche03g010570.1.mRNA1               28.8    0.23 
Erche08g006440.1.mRNA1.mrna1gene=Erche08g006440.1.mRNA1               27.0    0.84 
Erche07g012190.1.mRNA1.mrna1gene=Erche07g012190.1.mRNA1               27.0    0.84 
Erche06g018560.1.mRNA1.mrna1gene=Erche06g018560.1.mRNA1               27.0    0.84 
Erche04g012600.1.mRNA1.mrna1gene=Erche04g012600.1.mRNA1               27.0    0.84 
Erche01g020820.1.mRNA1.mrna1gene=Erche01g020820.1.mRNA1               27.0    0.84 
Erche01g014410.2.mRNA1.mrna1gene=Erche01g014410.2.mRNA1               27.0    0.84 
Erche01g020850.1.mRNA1.mrna1gene=Erche01g020850.1.mRNA1               27.0    0.84 
Erche01g024690.1.mRNA1.mrna1gene=Erche01g024690.1.mRNA1               27.0    0.84 


>Erche07g022060.1.mRNA1.mrna1 gene=Erche07g022060.1.mRNA1
Length=816

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    AGTTGCAATAGCATCATTCT  20
            ||||||||||||||||||||
Sbjct  114  AGTTGCAATAGCATCATTCT  95


>Erche04g006780.1.mRNA1.mrna1 gene=Erche04g006780.1.mRNA1
Length=1818

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    AGTTGCAATAGCATCATTCT  20
            ||||||||||||||||||||
Sbjct  819  AGTTGCAATAGCATCATTCT  800


>Erche05g030550.1.mRNA1.mrna1 gene=Erche05g030550.1.mRNA1
Length=873

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    AGTTGCAATAGCATCATTCT  20
            |||||||||| |||||||||
Sbjct  819  AGTTGCAATAACATCATTCT  800


>Erche04g025900.1.mRNA1.mrna1 gene=Erche04g025900.1.mRNA1
Length=1896

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  2     GTTGCAATAGCATCA  16
             |||||||||||||||
Sbjct  1676  GTTGCAATAGCATCA  1662


>Erche04g031400.1.mRNA1.mrna1 gene=Erche04g031400.1.mRNA1
Length=1557

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  4    TGCAATAGCATCATT  18
            |||||||||||||||
Sbjct  288  TGCAATAGCATCATT  274


>Erche03g010570.1.mRNA1.mrna1 gene=Erche03g010570.1.mRNA1
Length=1725

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  4     TGCAATAGCATCATT  18
             |||||||||||||||
Sbjct  1578  TGCAATAGCATCATT  1564


>Erche08g006440.1.mRNA1.mrna1 gene=Erche08g006440.1.mRNA1
Length=5463

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  6     CAATAGCATCATTC  19
             ||||||||||||||
Sbjct  1072  CAATAGCATCATTC  1059


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  6     CAATAGCATCATTC  19
             ||||||||||||||
Sbjct  3277  CAATAGCATCATTC  3264


>Erche07g012190.1.mRNA1.mrna1 gene=Erche07g012190.1.mRNA1
Length=2568

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  1     AGTTGCAATAGCATCAT  17
             |||| ||||||||||||
Sbjct  1774  AGTTACAATAGCATCAT  1790


>Erche06g018560.1.mRNA1.mrna1 gene=Erche06g018560.1.mRNA1
Length=171

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1   AGTTGCAATAGCATCATTCT  20
           |||| || ||||||||||||
Sbjct  99  AGTTTCATTAGCATCATTCT  80


>Erche04g012600.1.mRNA1.mrna1 gene=Erche04g012600.1.mRNA1
Length=1320

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  6    CAATAGCATCATTC  19
            ||||||||||||||
Sbjct  409  CAATAGCATCATTC  396


>Erche01g020820.1.mRNA1.mrna1 gene=Erche01g020820.1.mRNA1
Length=2748

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  1    AGTTGCAATAGCATCAT  17
            |||||||||| ||||||
Sbjct  459  AGTTGCAATAACATCAT  443


>Erche01g014410.2.mRNA1.mrna1 gene=Erche01g014410.2.mRNA1
Length=2967

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  1    AGTTGCAATAGCATCAT  17
            |||||||||| ||||||
Sbjct  477  AGTTGCAATAACATCAT  461


>Erche01g020850.1.mRNA1.mrna1 gene=Erche01g020850.1.mRNA1
Length=1095

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  1    AGTTGCAATAGCATCAT  17
            |||||||||| ||||||
Sbjct  252  AGTTGCAATAACATCAT  236


>Erche01g024690.1.mRNA1.mrna1 gene=Erche01g024690.1.mRNA1
Length=1446

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  3    TTGCAATAGCATCA  16
            ||||||||||||||
Sbjct  262  TTGCAATAGCATCA  249



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5