BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche03g027020.1.mRNA1.mrna1gene=Erche03g027020.1.mRNA1               38.1    4e-04
Erche08g001260.1.mRNA1.mrna1gene=Erche08g001260.1.mRNA1               27.0    0.84 
Erche07g006690.1.mRNA1.mrna1gene=Erche07g006690.1.mRNA1               27.0    0.84 
Erche07g007640.1.mRNA1.mrna1gene=Erche07g007640.1.mRNA1               27.0    0.84 
Erche07g023590.1.mRNA1.mrna1gene=Erche07g023590.1.mRNA1               27.0    0.84 
Erche06g003790.1.mRNA1.mrna1gene=Erche06g003790.1.mRNA1               27.0    0.84 
Erche05g036250.1.mRNA1.mrna1gene=Erche05g036250.1.mRNA1               27.0    0.84 
Erche03g021430.1.mRNA1.mrna1gene=Erche03g021430.1.mRNA1               27.0    0.84 
Erche03g031780.1.mRNA1.mrna1gene=Erche03g031780.1.mRNA1               27.0    0.84 


>Erche03g027020.1.mRNA1.mrna1 gene=Erche03g027020.1.mRNA1
Length=6159

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    CCGGTAAAGATCCACAACAT  20
            ||||||||||||||||||||
Sbjct  792  CCGGTAAAGATCCACAACAT  773


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  4     GTAAAGATCCACAACAT  20
             ||||||||| |||||||
Sbjct  2232  GTAAAGATCGACAACAT  2216


>Erche08g001260.1.mRNA1.mrna1 gene=Erche08g001260.1.mRNA1
Length=2271

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6     AAAGATCCACAACA  19
             ||||||||||||||
Sbjct  1273  AAAGATCCACAACA  1286


>Erche07g006690.1.mRNA1.mrna1 gene=Erche07g006690.1.mRNA1
Length=1326

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  3    GGTAAAGATCCACAACA  19
            ||| |||||||||||||
Sbjct  325  GGTCAAGATCCACAACA  309


>Erche07g007640.1.mRNA1.mrna1 gene=Erche07g007640.1.mRNA1
Length=1995

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  6    AAAGATCCACAACA  19
            ||||||||||||||
Sbjct  721  AAAGATCCACAACA  708


>Erche07g023590.1.mRNA1.mrna1 gene=Erche07g023590.1.mRNA1
Length=2073

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  4    GTAAAGATCCACAACAT  20
            ||||||||| |||||||
Sbjct  735  GTAAAGATCGACAACAT  719


>Erche06g003790.1.mRNA1.mrna1 gene=Erche06g003790.1.mRNA1
Length=4125

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6   AAAGATCCACAACA  19
           ||||||||||||||
Sbjct  58  AAAGATCCACAACA  71


>Erche05g036250.1.mRNA1.mrna1 gene=Erche05g036250.1.mRNA1
Length=11346

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  6     AAAGATCCACAACA  19
             ||||||||||||||
Sbjct  4264  AAAGATCCACAACA  4251


>Erche03g021430.1.mRNA1.mrna1 gene=Erche03g021430.1.mRNA1
Length=5133

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  7     AAGATCCACAACAT  20
             ||||||||||||||
Sbjct  4698  AAGATCCACAACAT  4685


>Erche03g031780.1.mRNA1.mrna1 gene=Erche03g031780.1.mRNA1
Length=1197

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  3     GGTAAAGATCCACA  16
             ||||||||||||||
Sbjct  1123  GGTAAAGATCCACA  1136



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5