BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche04g006870.1.mRNA1.mrna1gene=Erche04g006870.1.mRNA1               38.1    4e-04
Erche05g040930.1.mRNA1.mrna1gene=Erche05g040930.1.mRNA1               28.8    0.23 
Erche08g030340.1.mRNA1.mrna1gene=Erche08g030340.1.mRNA1               27.0    0.84 
Erche07g000690.1.mRNA1.mrna1gene=Erche07g000690.1.mRNA1               27.0    0.84 
Erche07g011890.1.mRNA1.mrna1gene=Erche07g011890.1.mRNA1               27.0    0.84 
Erche03g002400.1.mRNA1.mrna1gene=Erche03g002400.1.mRNA1               27.0    0.84 
Erche03g019450.1.mRNA1.mrna1gene=Erche03g019450.1.mRNA1               27.0    0.84 
Erche02g036880.1.mRNA1.mrna1gene=Erche02g036880.1.mRNA1               27.0    0.84 


>Erche04g006870.1.mRNA1.mrna1 gene=Erche04g006870.1.mRNA1
Length=2760

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    TATTCCTTTGACAAGCTCTG  20
            ||||||||||||||||||||
Sbjct  669  TATTCCTTTGACAAGCTCTG  688


>Erche05g040930.1.mRNA1.mrna1 gene=Erche05g040930.1.mRNA1
Length=1431

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  4    TCCTTTGACAAGCTC  18
            |||||||||||||||
Sbjct  622  TCCTTTGACAAGCTC  636


>Erche08g030340.1.mRNA1.mrna1 gene=Erche08g030340.1.mRNA1
Length=3303

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  5    CCTTTGACAAGCTC  18
            ||||||||||||||
Sbjct  233  CCTTTGACAAGCTC  220


>Erche07g000690.1.mRNA1.mrna1 gene=Erche07g000690.1.mRNA1
Length=3321

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  5    CCTTTGACAAGCTC  18
            ||||||||||||||
Sbjct  248  CCTTTGACAAGCTC  235


>Erche07g011890.1.mRNA1.mrna1 gene=Erche07g011890.1.mRNA1
Length=1761

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  3     TTCCTTTGACAAGCTCT  19
             ||||| |||||||||||
Sbjct  1314  TTCCTCTGACAAGCTCT  1298


>Erche03g002400.1.mRNA1.mrna1 gene=Erche03g002400.1.mRNA1
Length=1626

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  4    TCCTTTGACAAGCTCTG  20
            |||||| ||||||||||
Sbjct  372  TCCTTTAACAAGCTCTG  356


>Erche03g019450.1.mRNA1.mrna1 gene=Erche03g019450.1.mRNA1
Length=1662

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  3     TTCCTTTGACAAGCTCT  19
             |||||||||||| ||||
Sbjct  1267  TTCCTTTGACAAACTCT  1251


>Erche02g036880.1.mRNA1.mrna1 gene=Erche02g036880.1.mRNA1
Length=2985

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  4    TCCTTTGACAAGCTCTG  20
            |||||| ||||||||||
Sbjct  264  TCCTTTCACAAGCTCTG  248



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5