BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g022060.1.mRNA1.mrna1gene=Erche07g022060.1.mRNA1               38.1    4e-04
Erche05g030550.1.mRNA1.mrna1gene=Erche05g030550.1.mRNA1               38.1    4e-04
Erche04g006780.1.mRNA1.mrna1gene=Erche04g006780.1.mRNA1               38.1    4e-04
Erche07g023020.1.mRNA1.mrna1gene=Erche07g023020.1.mRNA1               28.8    0.23 
Erche06g007610.1.mRNA1.mrna1gene=Erche06g007610.1.mRNA1               28.8    0.23 
Erche02g027270.1.mRNA1.mrna1gene=Erche02g027270.1.mRNA1               28.8    0.23 
Erche02g016470.1.mRNA1.mrna1gene=Erche02g016470.1.mRNA1               28.8    0.23 
Erche05g040110.1.mRNA1.mrna1gene=Erche05g040110.1.mRNA1               27.0    0.84 
Erche05g020660.1.mRNA1.mrna1gene=Erche05g020660.1.mRNA1               27.0    0.84 
Erche05g020060.1.mRNA1.mrna1gene=Erche05g020060.1.mRNA1               27.0    0.84 
Erche03g018130.1.mRNA1.mrna1gene=Erche03g018130.1.mRNA1               27.0    0.84 
Erche03g019250.1.mRNA1.mrna1gene=Erche03g019250.1.mRNA1               27.0    0.84 


>Erche07g022060.1.mRNA1.mrna1 gene=Erche07g022060.1.mRNA1
Length=816

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    TTCCTTGAGCCTCTTACATT  20
            ||||||||||||||||||||
Sbjct  145  TTCCTTGAGCCTCTTACATT  164


>Erche05g030550.1.mRNA1.mrna1 gene=Erche05g030550.1.mRNA1
Length=873

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    TTCCTTGAGCCTCTTACATT  20
            ||||||||||||||||||||
Sbjct  850  TTCCTTGAGCCTCTTACATT  869


>Erche04g006780.1.mRNA1.mrna1 gene=Erche04g006780.1.mRNA1
Length=1818

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    TTCCTTGAGCCTCTTACATT  20
            ||||||||||||||||||||
Sbjct  850  TTCCTTGAGCCTCTTACATT  869


>Erche07g023020.1.mRNA1.mrna1 gene=Erche07g023020.1.mRNA1
Length=531

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  1    TTCCTTGAGCCTCTT  15
            |||||||||||||||
Sbjct  318  TTCCTTGAGCCTCTT  304


>Erche06g007610.1.mRNA1.mrna1 gene=Erche06g007610.1.mRNA1
Length=1290

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  3     CCTTGAGCCTCTTAC  17
             |||||||||||||||
Sbjct  1237  CCTTGAGCCTCTTAC  1223


>Erche02g027270.1.mRNA1.mrna1 gene=Erche02g027270.1.mRNA1
Length=777

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  2    TCCTTGAGCCTCTTA  16
            |||||||||||||||
Sbjct  728  TCCTTGAGCCTCTTA  742


>Erche02g016470.1.mRNA1.mrna1 gene=Erche02g016470.1.mRNA1
Length=4278

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  4    CTTGAGCCTCTTACA  18
            |||||||||||||||
Sbjct  211  CTTGAGCCTCTTACA  225


 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  4     CTTGAGCCTCTTACA  18
             |||||||||||||||
Sbjct  2914  CTTGAGCCTCTTACA  2928


>Erche05g040110.1.mRNA1.mrna1 gene=Erche05g040110.1.mRNA1
Length=2115

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  4     CTTGAGCCTCTTACATT  20
             |||||||||||| ||||
Sbjct  1864  CTTGAGCCTCTTCCATT  1880


>Erche05g020660.1.mRNA1.mrna1 gene=Erche05g020660.1.mRNA1
Length=1674

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 17/18 (94%), Gaps = 1/18 (6%)
 Strand=Plus/Minus

Query  2    TCCTTGAGCCTCTT-ACA  18
            |||||||||||||| |||
Sbjct  920  TCCTTGAGCCTCTTCACA  903


>Erche05g020060.1.mRNA1.mrna1 gene=Erche05g020060.1.mRNA1
Length=1944

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 17/18 (94%), Gaps = 1/18 (6%)
 Strand=Plus/Minus

Query  2     TCCTTGAGCCTCTT-ACA  18
             |||||||||||||| |||
Sbjct  1190  TCCTTGAGCCTCTTCACA  1173


>Erche03g018130.1.mRNA1.mrna1 gene=Erche03g018130.1.mRNA1
Length=1254

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  4    CTTGAGCCTCTTACATT  20
            ||| |||||||||||||
Sbjct  235  CTTAAGCCTCTTACATT  251


>Erche03g019250.1.mRNA1.mrna1 gene=Erche03g019250.1.mRNA1
Length=1131

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  1    TTCCTTGAGCCTCT  14
            ||||||||||||||
Sbjct  457  TTCCTTGAGCCTCT  444



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5