BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009500.1.mRNA1.mrna1gene=Erche07g009500.1.mRNA1               38.1    4e-04
Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche03g032390.1.mRNA1.mrna1gene=Erche03g032390.1.mRNA1               38.1    4e-04
Erche08g020250.1.mRNA1.mrna1gene=Erche08g020250.1.mRNA1               27.0    0.84 
Erche08g011960.1.mRNA1.mrna1gene=Erche08g011960.1.mRNA1               27.0    0.84 
Erche05g007560.1.mRNA1.mrna1gene=Erche05g007560.1.mRNA1               27.0    0.84 
Erche04g017373.1.mRNA1.mrna1gene=Erche04g017373.1.mRNA1               27.0    0.84 


>Erche07g009500.1.mRNA1.mrna1 gene=Erche07g009500.1.mRNA1
Length=1488

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TCAACTCTATCAGGAAAATA  20
            ||||||||||||||||||||
Sbjct  569  TCAACTCTATCAGGAAAATA  550


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     TCAACTCTATCAGGAAAATA  20
             ||||||||||||||||||||
Sbjct  7355  TCAACTCTATCAGGAAAATA  7336


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TCAACTCTATCAGGAAAATA  20
            |||||||||||||| |||||
Sbjct  488  TCAACTCTATCAGGTAAATA  469


 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  1     TCAACTCTATCAGGAAAA  18
             ||||||||| ||||||||
Sbjct  1829  TCAACTCTACCAGGAAAA  1812


 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  1     TCAACTCTATCAGGAAAA  18
             ||||||||| ||||||||
Sbjct  3296  TCAACTCTACCAGGAAAA  3279


>Erche03g032390.1.mRNA1.mrna1 gene=Erche03g032390.1.mRNA1
Length=2571

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TCAACTCTATCAGGAAAATA  20
            ||||||||||||||||||||
Sbjct  572  TCAACTCTATCAGGAAAATA  553


>Erche08g020250.1.mRNA1.mrna1 gene=Erche08g020250.1.mRNA1
Length=2991

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  1     TCAACTCTATCAGGAAA  17
             |||||||||||||| ||
Sbjct  2147  TCAACTCTATCAGGCAA  2131


>Erche08g011960.1.mRNA1.mrna1 gene=Erche08g011960.1.mRNA1
Length=4707

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  2     CAACTCTATCAGGA  15
             ||||||||||||||
Sbjct  1075  CAACTCTATCAGGA  1062


>Erche05g007560.1.mRNA1.mrna1 gene=Erche05g007560.1.mRNA1
Length=1299

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  7    CTATCAGGAAAATA  20
            ||||||||||||||
Sbjct  941  CTATCAGGAAAATA  954


>Erche04g017373.1.mRNA1.mrna1 gene=Erche04g017373.1.mRNA1
Length=6738

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  2     CAACTCTATCAGGAAAA  18
             ||||||||||||| |||
Sbjct  5843  CAACTCTATCAGGTAAA  5827



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5