BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche04g006870.1.mRNA1.mrna1gene=Erche04g006870.1.mRNA1               38.1    4e-04
Erche02g027700.1.mRNA1.mrna1gene=Erche02g027700.1.mRNA1               30.7    0.065
Erche06g023060.1.mRNA1.mrna1gene=Erche06g023060.1.mRNA1               27.0    0.84 
Erche05g030550.1.mRNA1.mrna1gene=Erche05g030550.1.mRNA1               27.0    0.84 
Erche04g006780.1.mRNA1.mrna1gene=Erche04g006780.1.mRNA1               27.0    0.84 
Erche04g006910.1.mRNA1.mrna1gene=Erche04g006910.1.mRNA1               27.0    0.84 
Erche01g027030.1.mRNA1.mrna1gene=Erche01g027030.1.mRNA1               27.0    0.84 


>Erche04g006870.1.mRNA1.mrna1 gene=Erche04g006870.1.mRNA1
Length=2760

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     TCTATTGACACATATATTGT  20
             ||||||||||||||||||||
Sbjct  1936  TCTATTGACACATATATTGT  1955


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    TCTATTGACACATATATTGT  20
            |||||||| |||||||||||
Sbjct  541  TCTATTGAAACATATATTGT  560


>Erche02g027700.1.mRNA1.mrna1 gene=Erche02g027700.1.mRNA1
Length=1821

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  1     TCTATTGACACATATATTG  19
             |||||||||||| ||||||
Sbjct  1767  TCTATTGACACAGATATTG  1785


>Erche06g023060.1.mRNA1.mrna1 gene=Erche06g023060.1.mRNA1
Length=1098

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  1    TCTATTGACACATATAT  17
            |||||||| ||||||||
Sbjct  652  TCTATTGAAACATATAT  668


>Erche05g030550.1.mRNA1.mrna1 gene=Erche05g030550.1.mRNA1
Length=873

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  1    TCTATTGACACATATAT  17
            |||||||| ||||||||
Sbjct  652  TCTATTGAAACATATAT  668


>Erche04g006780.1.mRNA1.mrna1 gene=Erche04g006780.1.mRNA1
Length=1818

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  1    TCTATTGACACATATAT  17
            |||||||| ||||||||
Sbjct  652  TCTATTGAAACATATAT  668


>Erche04g006910.1.mRNA1.mrna1 gene=Erche04g006910.1.mRNA1
Length=2280

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  1     TCTATTGACACATATAT  17
             |||||||| ||||||||
Sbjct  1831  TCTATTGAAACATATAT  1847


>Erche01g027030.1.mRNA1.mrna1 gene=Erche01g027030.1.mRNA1
Length=3558

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  1     TCTATTGACACATA  14
             ||||||||||||||
Sbjct  1154  TCTATTGACACATA  1141



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5