BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche08g007620.1.mRNA1.mrna1gene=Erche08g007620.1.mRNA1               38.1    4e-04
Erche08g007290.1.mRNA1.mrna1gene=Erche08g007290.1.mRNA1               38.1    4e-04
Erche08g007270.1.mRNA1.mrna1gene=Erche08g007270.1.mRNA1               38.1    4e-04
Erche01g045460.1.mRNA1.mrna1gene=Erche01g045460.1.mRNA1               38.1    4e-04
Erche01g045600.1.mRNA1.mrna1gene=Erche01g045600.1.mRNA1               38.1    4e-04
Erche04g013840.1.mRNA1.mrna1gene=Erche04g013840.1.mRNA1               36.2    0.001
Erche03g036131.1.mRNA1.mrna1gene=Erche03g036131.1.mRNA1               32.5    0.018
Erche02g018800.1.mRNA1.mrna1gene=Erche02g018800.1.mRNA1               32.5    0.018
Erche06g010980.1.mRNA1.mrna1gene=Erche06g010980.1.mRNA1               28.8    0.23 
Erche06g003477.1.mRNA1.mrna1gene=Erche06g003477.1.mRNA1               28.8    0.23 
Erche06g003370.1.mRNA1.mrna1gene=Erche06g003370.1.mRNA1               28.8    0.23 
Erche02g023890.1.mRNA1.mrna1gene=Erche02g023890.1.mRNA1               28.8    0.23 


>Erche08g007620.1.mRNA1.mrna1 gene=Erche08g007620.1.mRNA1
Length=1383

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GTTCTGACCAAGTGTAGTTG  20
            ||||||||||||||||||||
Sbjct  990  GTTCTGACCAAGTGTAGTTG  971


>Erche08g007290.1.mRNA1.mrna1 gene=Erche08g007290.1.mRNA1
Length=3513

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GTTCTGACCAAGTGTAGTTG  20
             ||||||||||||||||||||
Sbjct  1023  GTTCTGACCAAGTGTAGTTG  1004


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GTTCTGACCAAGTGTAGTTG  20
             |||||| |||||||||| ||
Sbjct  3147  GTTCTGCCCAAGTGTAGCTG  3128


>Erche08g007270.1.mRNA1.mrna1 gene=Erche08g007270.1.mRNA1
Length=1413

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GTTCTGACCAAGTGTAGTTG  20
             ||||||||||||||||||||
Sbjct  1020  GTTCTGACCAAGTGTAGTTG  1001


>Erche01g045460.1.mRNA1.mrna1 gene=Erche01g045460.1.mRNA1
Length=1542

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GTTCTGACCAAGTGTAGTTG  20
             ||||||||||||||||||||
Sbjct  1275  GTTCTGACCAAGTGTAGTTG  1256


>Erche01g045600.1.mRNA1.mrna1 gene=Erche01g045600.1.mRNA1
Length=2358

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GTTCTGACCAAGTGTAGTTG  20
            ||||||||||||||||||||
Sbjct  921  GTTCTGACCAAGTGTAGTTG  902


 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GTTCTGACCAAGTGTAGTTG  20
             ||||||||||||||||||||
Sbjct  2103  GTTCTGACCAAGTGTAGTTG  2084


>Erche04g013840.1.mRNA1.mrna1 gene=Erche04g013840.1.mRNA1
Length=1314

 Score = 36.2 bits (19),  Expect = 0.001
 Identities = 19/19 (100%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  2     TTCTGACCAAGTGTAGTTG  20
             |||||||||||||||||||
Sbjct  1031  TTCTGACCAAGTGTAGTTG  1013


>Erche03g036131.1.mRNA1.mrna1 gene=Erche03g036131.1.mRNA1
Length=912

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GTTCTGACCAAGTGTAGTTG  20
            ||| ||||||||||||||||
Sbjct  639  GTTGTGACCAAGTGTAGTTG  620


>Erche02g018800.1.mRNA1.mrna1 gene=Erche02g018800.1.mRNA1
Length=3279

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GTTCTGACCAAGTGTAGTTG  20
             ||||||||||||||| ||||
Sbjct  2994  GTTCTGACCAAGTGTTGTTG  2975


>Erche06g010980.1.mRNA1.mrna1 gene=Erche06g010980.1.mRNA1
Length=1632

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  2     TTCTGACCAAGTGTA  16
             |||||||||||||||
Sbjct  1424  TTCTGACCAAGTGTA  1438


>Erche06g003477.1.mRNA1.mrna1 gene=Erche06g003477.1.mRNA1
Length=327

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  1    GTTCTGACCAAGTGT  15
            |||||||||||||||
Sbjct  250  GTTCTGACCAAGTGT  264


>Erche06g003370.1.mRNA1.mrna1 gene=Erche06g003370.1.mRNA1
Length=354

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  1    GTTCTGACCAAGTGT  15
            |||||||||||||||
Sbjct  277  GTTCTGACCAAGTGT  291


>Erche02g023890.1.mRNA1.mrna1 gene=Erche02g023890.1.mRNA1
Length=4125

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  5     TGACCAAGTGTAGTT  19
             |||||||||||||||
Sbjct  1539  TGACCAAGTGTAGTT  1525



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5