BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009500.1.mRNA1.mrna1gene=Erche07g009500.1.mRNA1               38.1    4e-04
Erche03g026260.1.mRNA1.mrna1gene=Erche03g026260.1.mRNA1               28.8    0.23 
Erche08g024510.1.mRNA1.mrna1gene=Erche08g024510.1.mRNA1               27.0    0.84 
Erche08g024700.1.mRNA1.mrna1gene=Erche08g024700.1.mRNA1               27.0    0.84 
Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               27.0    0.84 
Erche07g007220.1.mRNA1.mrna1gene=Erche07g007220.1.mRNA1               27.0    0.84 
Erche07g007170.1.mRNA1.mrna1gene=Erche07g007170.1.mRNA1               27.0    0.84 
Erche05g007710.1.mRNA1.mrna1gene=Erche05g007710.1.mRNA1               27.0    0.84 
Erche04g024010.1.mRNA1.mrna1gene=Erche04g024010.1.mRNA1               27.0    0.84 
Erche03g032390.1.mRNA1.mrna1gene=Erche03g032390.1.mRNA1               27.0    0.84 
Erche02g004300.1.mRNA1.mrna1gene=Erche02g004300.1.mRNA1               27.0    0.84 
Erche02g004010.1.mRNA1.mrna1gene=Erche02g004010.1.mRNA1               27.0    0.84 


>Erche07g009500.1.mRNA1.mrna1 gene=Erche07g009500.1.mRNA1
Length=1488

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GACAAAAGCAAGACATGCCA  20
            ||||||||||||||||||||
Sbjct  469  GACAAAAGCAAGACATGCCA  450


>Erche03g026260.1.mRNA1.mrna1 gene=Erche03g026260.1.mRNA1
Length=1866

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  1     GACAAAAGCAAGACATGC  18
             |||||||||||| |||||
Sbjct  1732  GACAAAAGCAAGGCATGC  1749


>Erche08g024510.1.mRNA1.mrna1 gene=Erche08g024510.1.mRNA1
Length=1230

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    AAGCAAGACATGCC  19
            ||||||||||||||
Sbjct  524  AAGCAAGACATGCC  537


>Erche08g024700.1.mRNA1.mrna1 gene=Erche08g024700.1.mRNA1
Length=1326

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  5    AAAGCAAGACATGC  18
            ||||||||||||||
Sbjct  540  AAAGCAAGACATGC  553


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GACAAAAGCAAGACATGCCA  20
            ||||||||||| || |||||
Sbjct  388  GACAAAAGCAACACCTGCCA  369


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GACAAAAGCAAGACATGCCA  20
             ||||||||||| || |||||
Sbjct  7255  GACAAAAGCAACACCTGCCA  7236


>Erche07g007220.1.mRNA1.mrna1 gene=Erche07g007220.1.mRNA1
Length=993

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  5    AAAGCAAGACATGC  18
            ||||||||||||||
Sbjct  973  AAAGCAAGACATGC  986


>Erche07g007170.1.mRNA1.mrna1 gene=Erche07g007170.1.mRNA1
Length=414

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  5    AAAGCAAGACATGC  18
            ||||||||||||||
Sbjct  394  AAAGCAAGACATGC  407


>Erche05g007710.1.mRNA1.mrna1 gene=Erche05g007710.1.mRNA1
Length=1707

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  5    AAAGCAAGACATGC  18
            ||||||||||||||
Sbjct  531  AAAGCAAGACATGC  544


>Erche04g024010.1.mRNA1.mrna1 gene=Erche04g024010.1.mRNA1
Length=3984

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  2     ACAAAAGCAAGACATGC  18
             |||| ||||||||||||
Sbjct  1239  ACAACAGCAAGACATGC  1255


>Erche03g032390.1.mRNA1.mrna1 gene=Erche03g032390.1.mRNA1
Length=2571

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GACAAAAGCAAGACATGCCA  20
            ||| ||||||| ||||||||
Sbjct  472  GACTAAAGCAACACATGCCA  453


>Erche02g004300.1.mRNA1.mrna1 gene=Erche02g004300.1.mRNA1
Length=1719

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  3   CAAAAGCAAGACAT  16
           ||||||||||||||
Sbjct  68  CAAAAGCAAGACAT  81


>Erche02g004010.1.mRNA1.mrna1 gene=Erche02g004010.1.mRNA1
Length=1701

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  3   CAAAAGCAAGACAT  16
           ||||||||||||||
Sbjct  68  CAAAAGCAAGACAT  81



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5