BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche01g035790.1.mRNA1.mrna1gene=Erche01g035790.1.mRNA1               32.5    0.018
Erche07g023100.1.mRNA1.mrna1gene=Erche07g023100.1.mRNA1               28.8    0.23 
Erche02g039710.1.mRNA1.mrna1gene=Erche02g039710.1.mRNA1               28.8    0.23 
Erche08g004850.1.mRNA1.mrna1gene=Erche08g004850.1.mRNA1               27.0    0.84 
Erche06g022970.1.mRNA1.mrna1gene=Erche06g022970.1.mRNA1               27.0    0.84 
Erche03g024998.1.mRNA1.mrna1gene=Erche03g024998.1.mRNA1               27.0    0.84 
Erche03g024640.1.mRNA1.mrna1gene=Erche03g024640.1.mRNA1               27.0    0.84 


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GATGAACCGGATTCGTTAGA  20
             ||||||||||||||||||||
Sbjct  4595  GATGAACCGGATTCGTTAGA  4576


>Erche01g035790.1.mRNA1.mrna1 gene=Erche01g035790.1.mRNA1
Length=2337

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GATGAACCGGATTCGTTAGA  20
             |||||||||||||||| |||
Sbjct  1121  GATGAACCGGATTCGTGAGA  1102


>Erche07g023100.1.mRNA1.mrna1 gene=Erche07g023100.1.mRNA1
Length=2112

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  1     GATGAACCGGATTCGTTA  18
             ||||||||||||| ||||
Sbjct  1102  GATGAACCGGATTTGTTA  1119


>Erche02g039710.1.mRNA1.mrna1 gene=Erche02g039710.1.mRNA1
Length=5091

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 18/19 (95%), Gaps = 1/19 (5%)
 Strand=Plus/Plus

Query  2     ATGAACCGGATTCG-TTAG  19
             |||||||||||||| ||||
Sbjct  3196  ATGAACCGGATTCGATTAG  3214


>Erche08g004850.1.mRNA1.mrna1 gene=Erche08g004850.1.mRNA1
Length=1392

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  2    ATGAACCGGATTCGTTA  18
            ||||||||||||| |||
Sbjct  949  ATGAACCGGATTCTTTA  933


>Erche06g022970.1.mRNA1.mrna1 gene=Erche06g022970.1.mRNA1
Length=1410

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  2    ATGAACCGGATTCGTTA  18
            ||||||||||||| |||
Sbjct  768  ATGAACCGGATTCCTTA  752


>Erche03g024998.1.mRNA1.mrna1 gene=Erche03g024998.1.mRNA1
Length=1968

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  3   TGAACCGGATTCGT  16
           ||||||||||||||
Sbjct  53  TGAACCGGATTCGT  66


>Erche03g024640.1.mRNA1.mrna1 gene=Erche03g024640.1.mRNA1
Length=1968

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  3   TGAACCGGATTCGT  16
           ||||||||||||||
Sbjct  53  TGAACCGGATTCGT  66



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5