BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Eche_v2.0_cds.fasta 30,099 sequences; 37,600,338 total letters Query= Ah_UBOX_Slocus Length=1125 Score E Sequences producing significant alignments: (Bits) Value Erche02g024400.1.mRNA1.mrna1gene=Erche02g024400.1.mRNA1 1659 0.0 >Erche02g024400.1.mRNA1.mrna1 gene=Erche02g024400.1.mRNA1 Length=1122 Score = 1659 bits (898), Expect = 0.0 Identities = 1050/1125 (93%), Gaps = 3/1125 (0%) Strand=Plus/Plus Query 1 ATGGCCTTTGACTTACCAAACGATTTCAGGTGCCCGATCTCTCTTGAGATTATGTCCGAC 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGCCTTTGAGTTACCAAACGATTTCAGGTGCCCGATCTCTCTTGAGATTATGTCTGAC 60 Query 61 CCGGTTATCCTCCAATCGGGTCATACTTTCGATCGGGTCTCTATCCAACAATGGATTGAC 120 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 CCGGTTATCCTCCAATCGGGTCATACTTTCGATCGGGTCTCTATCCAACGGTGGATTGAC 120 Query 121 TCCGGCAATCGAACTTGTCCAATCACCAAGCTCCCGTTATCTGAAAACCCTTCTCTGATT 180 |||||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||| Sbjct 121 TCCGGCAATCGAACTTGTCCAATCACTAAGCTCCCGTTATCCGAAACCCCTTCTTTGATT 180 Query 181 CCCAATCATGCTCTCCGGAGCTTAATTTCAAACTTTGCCCATGTGAGTCCTAAGGAATCA 240 |||||||| || || || |||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 CCCAATCACGCACTTCGAAGCTTAATTTCAAACTTTGCTCATGTGAGTCCTAAGGAATCA 240 Query 241 TCACGTCCTCGAACTCAACAAGAACACTCTCACTCTCAATCGCAAGCTTTAATCTCCACT 300 ||||| | ||||| |||||||||||||| |||||||| |||||||||||||||||| Sbjct 241 ---CGTCCCAGGACTCAGCAAGAACACTCTCAGTCTCAATCCCAAGCTTTAATCTCCACT 297 Query 301 CTCATCTCTCGATCGTCGTCTAATGCATCAAAGCTCGAGTCTTTGAGTCGACTTGTTCGT 360 ||| ||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||| Sbjct 298 CTCGTCTCTCGATCGTCGTCTAATGCATCAAGGCTCGAGTCCCTGACTCGCCTTGTTCGT 357 Query 361 CTCACGAAGCGAGACTCGTCAATCAGAAGGAAAGTTACTGAGTCAGGCGCTGTTCGTGCG 420 |||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct 358 CTCACGAAGCGAGACTCGTCAATCAGGAGGAAAGTTACCGAGTCAGGAGCGGTTCGTGCG 417 Query 421 GCGTTGGATTGTGTTGACTCTGGTAATCATGTTTTACAAGAAAAGTCTCTGTCTTTGCTT 480 || |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 418 GCTCTGGATTGTGTTGACTCTGGTAATCATGTTTTACAGGAAAAGTCTCTATCTTTGCTA 477 Query 481 TTGAATCTTAGTTTAGAAGATGATAACAAAGTGGGTTTAGTAGCTGATGGAGTGATAAGA 540 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 478 TTGAATCTTAGTTTAGAAGATGATAACAAAGTGGGTTTAGTCGCTGATGGAGTGATTAGA 537 Query 541 CGGATTGTTGCTGTTTTACGGGTCGGGTCACCGGATTGTAAAGCGATTGCTGCTACTCTG 600 ||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 538 CGGATCGTAGCTGTATTACGGGTCGGGTCACCCGATTGTAAAGCGATTGCTGCTACTCTA 597 Query 601 TTAACGAGTTTAGCTGTTGTGGAAGTGAATAAAGCTACTATTGGATCGTATCCTGATGCA 660 |||||||||||||||||||| |||||||| |||||||||||||| || || ||||||||| Sbjct 598 TTAACGAGTTTAGCTGTTGTAGAAGTGAACAAAGCTACTATTGGGTCTTACCCTGATGCA 657 Query 661 ATCTCTGCTCTTGTTTATCTTCTCCGGGTAGGGAATGATAGGGAGAGAAAGGAATCAGCG 720 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 658 ATCTCTGCTCTTGTTTCACTTCTCCGGGTAGGGAATGATAGGGAGAGAAAGGAATCGGCT 717 Query 721 ACAGCTCTTTACGCGCTCTGCTCGTTTCCGGATAATCGAAAACGGGTTGTGGATTGTGGG 780 || ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 718 ACGGCTCTTTACGCTCTTTGCTCGTTTCCGGATAATCGAAAACGGGTTGTGGATTGTGGG 777 Query 781 TCGGTGCCTATTTTGGTTGAAGCAGCTGATTCAGGGCTAGAGAGAGCAGTGGAAGTGTTG 840 |||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 778 TCGGTGTCTATTTTGGTTGAAGCAGCAGATTCAGGGCTAGAGAGAGCAGTTGAAGTGTTG 837 Query 841 GGACTTTTGGTTAAGTGTAGAGGAGGAAGAGAGGAAATGAGTAAAGTAAGTGGATTTGTT 900 |||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||| Sbjct 838 GGACTTTTGGTTAAGTGTAGAGGAGGAAGAGACGAAATGAGCAAAGTAAATGGCTTTGTT 897 Query 901 GAGGTTTTGGTTAACGTTTTGAGGAATGGGAGTTTGAAAGGGATTCAGTATTCTCTGTTT 960 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 898 GAGGTTTTGGTTAACGTTTTGAGGAATGGAAGTTTGAAAGGGATTCAGTATTCTCTGTTT 957 Query 961 ATCCTCAATTGCTTGTGTTGTTGTAGCCGAAATATCGTCGATGAGGTTAAAAGAGAAGGT 1020 |||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||| Sbjct 958 ATCCTCAATTGCTTGTGTTGTTGTAGCCGAGAAATCGTTGATGAGGTTAAGAGAGAAGGT 1017 Query 1021 GTTGTAGAGATATGCTTTGGTTTGGAGGATAATGAGAGTGAGAAAATCAGAAGGAATGCT 1080 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1018 GTTGTAGAGATATGCTTTGGTTTGGAGGATAATGAGAGTGAAAAAATCAGGAGGAATGCT 1077 Query 1081 ACTATCTTAGTCCATACTTTACTTGGGATTTCAATGAATTCATGA 1125 |||| |||||| ||||| |||||||||| | |||||||||||||| Sbjct 1078 ACTAACTTAGTTCATACATTACTTGGGAATCCAATGAATTCATGA 1122 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40532649300 Database: Eche_v2.0_cds.fasta Posted date: Jul 17, 2024 4:51 PM Number of letters in database: 37,600,338 Number of sequences in database: 30,099 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5