BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche08g006110.1.mRNA1.mrna1gene=Erche08g006110.1.mRNA1               38.1    4e-04
Erche02g043970.1.mRNA1.mrna1gene=Erche02g043970.1.mRNA1               27.0    0.84 
Erche02g013600.1.mRNA1.mrna1gene=Erche02g013600.1.mRNA1               27.0    0.84 
Erche01g033960.1.mRNA1.mrna1gene=Erche01g033960.1.mRNA1               27.0    0.84 


>Erche08g006110.1.mRNA1.mrna1 gene=Erche08g006110.1.mRNA1
Length=552

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1   AAATTGCCTTTATTCACATT  20
           ||||||||||||||||||||
Sbjct  74  AAATTGCCTTTATTCACATT  55


>Erche02g043970.1.mRNA1.mrna1 gene=Erche02g043970.1.mRNA1
Length=1266

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    AAATTGCCTTTATTCACATT  20
            |||| |||||||||||| ||
Sbjct  191  AAATGGCCTTTATTCACCTT  172


>Erche02g013600.1.mRNA1.mrna1 gene=Erche02g013600.1.mRNA1
Length=372

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  4    TTGCCTTTATTCACATT  20
            |||||||||| ||||||
Sbjct  161  TTGCCTTTATCCACATT  145


>Erche01g033960.1.mRNA1.mrna1 gene=Erche01g033960.1.mRNA1
Length=6403

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  2    AATTGCCTTTATTC  15
            ||||||||||||||
Sbjct  450  AATTGCCTTTATTC  463



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5