BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=22
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche05g016400.1.mRNA1.mrna1gene=Erche05g016400.1.mRNA1               41.7    4e-05
Erche02g008560.1.mRNA1.mrna1gene=Erche02g008560.1.mRNA1               28.8    0.31 


>Erche05g016400.1.mRNA1.mrna1 gene=Erche05g016400.1.mRNA1
Length=3396

 Score = 41.7 bits (22),  Expect = 4e-05
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  1     TAGAAGTGAGGCAAATACTCGG  22
             ||||||||||||||||||||||
Sbjct  2902  TAGAAGTGAGGCAAATACTCGG  2923


 Score = 39.9 bits (21),  Expect = 1e-04
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  2     AGAAGTGAGGCAAATACTCGG  22
             |||||||||||||||||||||
Sbjct  1047  AGAAGTGAGGCAAATACTCGG  1067


>Erche02g008560.1.mRNA1.mrna1 gene=Erche02g008560.1.mRNA1
Length=1533

 Score = 28.8 bits (15),  Expect = 0.31
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  2     AGAAGTGAGGCAAATACT  19
             |||||| |||||||||||
Sbjct  1041  AGAAGTCAGGCAAATACT  1058



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 148234224


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5