BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=46
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche06g008220.1.mRNA1.mrna1gene=Erche06g008220.1.mRNA1               45.4    2e-05
Erche04g001900.1.mRNA1.mrna1gene=Erche04g001900.1.mRNA1               34.4    0.042
Erche05g035140.1.mRNA1.mrna1gene=Erche05g035140.1.mRNA1               30.7    0.54 


>Erche06g008220.1.mRNA1.mrna1 gene=Erche06g008220.1.mRNA1
Length=1197

 Score = 45.4 bits (24),  Expect = 2e-05
 Identities = 38/45 (84%), Gaps = 0/45 (0%)
 Strand=Plus/Plus

Query  1    AGGAGAATTTAGCTACGAGGAGGAACAGATTATCATCATGCTTCA  45
            ||| || ||||| |  ||||| || ||||||||||||||||||||
Sbjct  201  AGGCGAGTTTAGTTCAGAGGAAGAGCAGATTATCATCATGCTTCA  245


>Erche04g001900.1.mRNA1.mrna1 gene=Erche04g001900.1.mRNA1
Length=3099

 Score = 34.4 bits (18),  Expect = 0.042
 Identities = 24/27 (89%), Gaps = 0/27 (0%)
 Strand=Plus/Minus

Query  12    GCTACGAGGAGGAACAGATTATCATCA  38
             |||| ||||| |||||||| |||||||
Sbjct  2072  GCTAGGAGGAAGAACAGATCATCATCA  2046


>Erche05g035140.1.mRNA1.mrna1 gene=Erche05g035140.1.mRNA1
Length=1134

 Score = 30.7 bits (16),  Expect = 0.54
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  18   AGGAGGAACAGATTATCAT  36
            ||||||| |||||||||||
Sbjct  762  AGGAGGATCAGATTATCAT  780



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 924206475


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5