BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009500.1.mRNA1.mrna1gene=Erche07g009500.1.mRNA1               38.1    4e-04
Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche03g029150.1.mRNA1.mrna1gene=Erche03g029150.1.mRNA1               32.5    0.018
Erche03g032390.1.mRNA1.mrna1gene=Erche03g032390.1.mRNA1               32.5    0.018
Erche01g035760.1.mRNA1.mrna1gene=Erche01g035760.1.mRNA1               32.5    0.018
Erche01g035910.1.mRNA1.mrna1gene=Erche01g035910.1.mRNA1               32.5    0.018
Erche03g031840.1.mRNA1.mrna1gene=Erche03g031840.1.mRNA1               30.7    0.065
Erche01g035780.1.mRNA1.mrna1gene=Erche01g035780.1.mRNA1               30.7    0.065
Erche03g034130.1.mRNA1.mrna1gene=Erche03g034130.1.mRNA1               28.8    0.23 
Erche02g026240.1.mRNA1.mrna1gene=Erche02g026240.1.mRNA1               28.8    0.23 
Erche02g024536.1.mRNA1.mrna1gene=Erche02g024536.1.mRNA1               28.8    0.23 
Erche01g014240.1.mRNA1.mrna1gene=Erche01g014240.1.mRNA1               27.0    0.84 
Erche01g035790.1.mRNA1.mrna1gene=Erche01g035790.1.mRNA1               27.0    0.84 


>Erche07g009500.1.mRNA1.mrna1 gene=Erche07g009500.1.mRNA1
Length=1488

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     AGAGTTAGTTGAGTGGTTCT  20
             ||||||||||||||||||||
Sbjct  990   AGAGTTAGTTGAGTGGTTCT  1009


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AGAGTTAGTTGAGTGGTTCT  20
            ||||||||||||||||||||
Sbjct  909  AGAGTTAGTTGAGTGGTTCT  928


>Erche03g029150.1.mRNA1.mrna1 gene=Erche03g029150.1.mRNA1
Length=2616

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     AGAGTTAGTTGAGTGGTTCT  20
             |||||||||||||||| |||
Sbjct  1356  AGAGTTAGTTGAGTGGATCT  1375


>Erche03g032390.1.mRNA1.mrna1 gene=Erche03g032390.1.mRNA1
Length=2571

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     AGAGTTAGTTGAGTGGTTCT  20
             || |||||||||||||||||
Sbjct  993   AGCGTTAGTTGAGTGGTTCT  1012


>Erche01g035760.1.mRNA1.mrna1 gene=Erche01g035760.1.mRNA1
Length=6111

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     AGAGTTAGTTGAGTGGTTCT  20
             |||||||||||||||| |||
Sbjct  2412  AGAGTTAGTTGAGTGGATCT  2431


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     AGAGTTAGTTGAGTGGTTCT  20
             |||||||||||||||| |||
Sbjct  4938  AGAGTTAGTTGAGTGGATCT  4957


>Erche01g035910.1.mRNA1.mrna1 gene=Erche01g035910.1.mRNA1
Length=2535

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AGAGTTAGTTGAGTGGTTCT  20
            |||||||||||||||| |||
Sbjct  879  AGAGTTAGTTGAGTGGATCT  898


>Erche03g031840.1.mRNA1.mrna1 gene=Erche03g031840.1.mRNA1
Length=1377

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  2    GAGTTAGTTGAGTGGTTCT  20
            ||||||||||||||| |||
Sbjct  928  GAGTTAGTTGAGTGGATCT  946


>Erche01g035780.1.mRNA1.mrna1 gene=Erche01g035780.1.mRNA1
Length=789

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  2    GAGTTAGTTGAGTGGTTCT  20
            ||||||||||||||| |||
Sbjct  469  GAGTTAGTTGAGTGGATCT  487


>Erche03g034130.1.mRNA1.mrna1 gene=Erche03g034130.1.mRNA1
Length=1425

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  2    GAGTTAGTTGAGTGG  16
            |||||||||||||||
Sbjct  928  GAGTTAGTTGAGTGG  942


>Erche02g026240.1.mRNA1.mrna1 gene=Erche02g026240.1.mRNA1
Length=660

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  6   TAGTTGAGTGGTTCT  20
           |||||||||||||||
Sbjct  56  TAGTTGAGTGGTTCT  70


>Erche02g024536.1.mRNA1.mrna1 gene=Erche02g024536.1.mRNA1
Length=660

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  6   TAGTTGAGTGGTTCT  20
           |||||||||||||||
Sbjct  56  TAGTTGAGTGGTTCT  70


>Erche01g014240.1.mRNA1.mrna1 gene=Erche01g014240.1.mRNA1
Length=7236

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  7     AGTTGAGTGGTTCT  20
             ||||||||||||||
Sbjct  2603  AGTTGAGTGGTTCT  2616


>Erche01g035790.1.mRNA1.mrna1 gene=Erche01g035790.1.mRNA1
Length=2337

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     AGAGTTAGTTGAGTGGTTCT  20
             ||| |||||||||||| |||
Sbjct  1851  AGAATTAGTTGAGTGGATCT  1870



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5