BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche01g035760.1.mRNA1.mrna1gene=Erche01g035760.1.mRNA1               34.4    0.005
Erche01g035790.1.mRNA1.mrna1gene=Erche01g035790.1.mRNA1               34.4    0.005
Erche05g002010.1.mRNA1.mrna1gene=Erche05g002010.1.mRNA1               27.0    0.84 
Erche05g001820.1.mRNA1.mrna1gene=Erche05g001820.1.mRNA1               27.0    0.84 
Erche03g017670.1.mRNA1.mrna1gene=Erche03g017670.1.mRNA1               27.0    0.84 
Erche03g029150.1.mRNA1.mrna1gene=Erche03g029150.1.mRNA1               27.0    0.84 
Erche02g038300.1.mRNA1.mrna1gene=Erche02g038300.1.mRNA1               27.0    0.84 
Erche01g035910.1.mRNA1.mrna1gene=Erche01g035910.1.mRNA1               27.0    0.84 


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     ATGTCGGCGATTATGCAGTT  20
             ||||||||||||||||||||
Sbjct  4742  ATGTCGGCGATTATGCAGTT  4723


>Erche01g035760.1.mRNA1.mrna1 gene=Erche01g035760.1.mRNA1
Length=6111

 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  1     ATGTCGGCGATTATGCAG  18
             ||||||||||||||||||
Sbjct  6008  ATGTCGGCGATTATGCAG  5991


 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  3     GTCGGCGATTATGCAG  18
             ||||||||||||||||
Sbjct  3066  GTCGGCGATTATGCAG  3051


 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  1     ATGTCGGCGATTATGCAG  18
             ||||| ||||||||||||
Sbjct  4340  ATGTCTGCGATTATGCAG  4323


>Erche01g035790.1.mRNA1.mrna1 gene=Erche01g035790.1.mRNA1
Length=2337

 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  1     ATGTCGGCGATTATGCAG  18
             ||||||||||||||||||
Sbjct  1253  ATGTCGGCGATTATGCAG  1236


>Erche05g002010.1.mRNA1.mrna1 gene=Erche05g002010.1.mRNA1
Length=1596

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  4     TCGGCGATTATGCAGTT  20
             |||||| ||||||||||
Sbjct  1214  TCGGCGTTTATGCAGTT  1230


>Erche05g001820.1.mRNA1.mrna1 gene=Erche05g001820.1.mRNA1
Length=1596

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  4     TCGGCGATTATGCAGTT  20
             |||||| ||||||||||
Sbjct  1214  TCGGCGTTTATGCAGTT  1230


>Erche03g017670.1.mRNA1.mrna1 gene=Erche03g017670.1.mRNA1
Length=1296

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  1    ATGTCGGCGATTAT  14
            ||||||||||||||
Sbjct  565  ATGTCGGCGATTAT  578


>Erche03g029150.1.mRNA1.mrna1 gene=Erche03g029150.1.mRNA1
Length=2616

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  2    TGTCGGCGATTATGCAG  18
            ||||| |||||||||||
Sbjct  757  TGTCGACGATTATGCAG  741


>Erche02g038300.1.mRNA1.mrna1 gene=Erche02g038300.1.mRNA1
Length=2886

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     ATGTCGGCGATTATGCAGTT  20
             ||||||||||| | ||||||
Sbjct  1838  ATGTCGGCGATAAGGCAGTT  1819


>Erche01g035910.1.mRNA1.mrna1 gene=Erche01g035910.1.mRNA1
Length=2535

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  2    TGTCGGCGATTATGCAG  18
            ||||| |||||||||||
Sbjct  310  TGTCGCCGATTATGCAG  294



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5