BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche01g035910.1.mRNA1.mrna1gene=Erche01g035910.1.mRNA1               38.1    4e-04
Erche03g029150.1.mRNA1.mrna1gene=Erche03g029150.1.mRNA1               34.4    0.005
Erche01g035760.1.mRNA1.mrna1gene=Erche01g035760.1.mRNA1               34.4    0.005
Erche01g035790.1.mRNA1.mrna1gene=Erche01g035790.1.mRNA1               34.4    0.005
Erche03g026540.1.mRNA1.mrna1gene=Erche03g026540.1.mRNA1               28.8    0.23 
Erche03g005310.1.mRNA1.mrna1gene=Erche03g005310.1.mRNA1               27.0    0.84 
Erche02g040770.1.mRNA1.mrna1gene=Erche02g040770.1.mRNA1               27.0    0.84 
Erche01g006340.1.mRNA1.mrna1gene=Erche01g006340.1.mRNA1               27.0    0.84 


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     AGCAGAGTTGCCAAGAACCT  20
             ||||||||||||||||||||
Sbjct  4759  AGCAGAGTTGCCAAGAACCT  4778


>Erche01g035910.1.mRNA1.mrna1 gene=Erche01g035910.1.mRNA1
Length=2535

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AGCAGAGTTGCCAAGAACCT  20
            ||||||||||||||||||||
Sbjct  328  AGCAGAGTTGCCAAGAACCT  347


>Erche03g029150.1.mRNA1.mrna1 gene=Erche03g029150.1.mRNA1
Length=2616

 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3    CAGAGTTGCCAAGAACCT  20
            ||||||||||||||||||
Sbjct  777  CAGAGTTGCCAAGAACCT  794


>Erche01g035760.1.mRNA1.mrna1 gene=Erche01g035760.1.mRNA1
Length=6111

 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3     CAGAGTTGCCAAGAACCT  20
             ||||||||||||||||||
Sbjct  1830  CAGAGTTGCCAAGAACCT  1847


 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3     CAGAGTTGCCAAGAACCT  20
             ||||||||||||||||||
Sbjct  3087  CAGAGTTGCCAAGAACCT  3104


 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3     CAGAGTTGCCAAGAACCT  20
             ||||||||||||||||||
Sbjct  4359  CAGAGTTGCCAAGAACCT  4376


 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3     CAGAGTTGCCAAGAACCT  20
             ||||||||||||||||||
Sbjct  6031  CAGAGTTGCCAAGAACCT  6048


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  4    AGAGTTGCCAAGAACCT  20
            |||||||||||||||||
Sbjct  307  AGAGTTGCCAAGAACCT  323


>Erche01g035790.1.mRNA1.mrna1 gene=Erche01g035790.1.mRNA1
Length=2337

 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3     CAGAGTTGCCAAGAACCT  20
             ||||||||||||||||||
Sbjct  1272  CAGAGTTGCCAAGAACCT  1289


>Erche03g026540.1.mRNA1.mrna1 gene=Erche03g026540.1.mRNA1
Length=1689

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  3     CAGAGTTGCCAAGAA  17
             |||||||||||||||
Sbjct  1049  CAGAGTTGCCAAGAA  1035


>Erche03g005310.1.mRNA1.mrna1 gene=Erche03g005310.1.mRNA1
Length=2001

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    AGTTGCCAAGAACC  19
            ||||||||||||||
Sbjct  510  AGTTGCCAAGAACC  523


>Erche02g040770.1.mRNA1.mrna1 gene=Erche02g040770.1.mRNA1
Length=1677

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  7    GTTGCCAAGAACCT  20
            ||||||||||||||
Sbjct  828  GTTGCCAAGAACCT  815


>Erche01g006340.1.mRNA1.mrna1 gene=Erche01g006340.1.mRNA1
Length=1173

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1   AGCAGAGTTGCCAAGAACCT  20
           |||||||| ||||||| |||
Sbjct  10  AGCAGAGTCGCCAAGATCCT  29



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5