BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009500.1.mRNA1.mrna1gene=Erche07g009500.1.mRNA1               38.1    4e-04
Erche03g032390.1.mRNA1.mrna1gene=Erche03g032390.1.mRNA1               38.1    4e-04
Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               32.5    0.018
Erche01g040350.1.mRNA1.mrna1gene=Erche01g040350.1.mRNA1               30.7    0.065
Erche03g031840.1.mRNA1.mrna1gene=Erche03g031840.1.mRNA1               28.8    0.23 
Erche08g029070.1.mRNA1.mrna1gene=Erche08g029070.1.mRNA1               27.0    0.84 
Erche06g030765.1.mRNA1.mrna1gene=Erche06g030765.1.mRNA1               27.0    0.84 
Erche06g031255.1.mRNA1.mrna1gene=Erche06g031255.1.mRNA1               27.0    0.84 
Erche05g017560.1.mRNA1.mrna1gene=Erche05g017560.1.mRNA1               27.0    0.84 
Erche03g017480.1.mRNA1.mrna1gene=Erche03g017480.1.mRNA1               27.0    0.84 


>Erche07g009500.1.mRNA1.mrna1 gene=Erche07g009500.1.mRNA1
Length=1488

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    CGGGAGCAGACAAAGCTGAG  20
            ||||||||||||||||||||
Sbjct  776  CGGGAGCAGACAAAGCTGAG  795


>Erche03g032390.1.mRNA1.mrna1 gene=Erche03g032390.1.mRNA1
Length=2571

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    CGGGAGCAGACAAAGCTGAG  20
            ||||||||||||||||||||
Sbjct  779  CGGGAGCAGACAAAGCTGAG  798


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    CGGGAGCAGACAAAGCTGAG  20
            |||||||||||||| |||||
Sbjct  695  CGGGAGCAGACAAATCTGAG  714


 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3     GGAGCAGACAAAGCTGAG  20
             ||| ||||||||||||||
Sbjct  2038  GGAACAGACAAAGCTGAG  2055


 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3     GGAGCAGACAAAGCTGAG  20
             ||| ||||||||||||||
Sbjct  3505  GGAACAGACAAAGCTGAG  3522


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     CGGGAGCAGACAAAGCTGAG  20
             ||| |||||||||| |||||
Sbjct  7562  CGGAAGCAGACAAATCTGAG  7581


>Erche01g040350.1.mRNA1.mrna1 gene=Erche01g040350.1.mRNA1
Length=1365

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  4    GAGCAGACAAAGCTGA  19
            ||||||||||||||||
Sbjct  898  GAGCAGACAAAGCTGA  913


>Erche03g031840.1.mRNA1.mrna1 gene=Erche03g031840.1.mRNA1
Length=1377

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3    GGAGCAGACAAAGCTGAG  20
            |||| |||||||||||||
Sbjct  715  GGAGAAGACAAAGCTGAG  732


>Erche08g029070.1.mRNA1.mrna1 gene=Erche08g029070.1.mRNA1
Length=672

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  5    AGCAGACAAAGCTG  18
            ||||||||||||||
Sbjct  156  AGCAGACAAAGCTG  169


>Erche06g030765.1.mRNA1.mrna1 gene=Erche06g030765.1.mRNA1
Length=843

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 19/21 (90%), Gaps = 1/21 (5%)
 Strand=Plus/Minus

Query  1    CGG-GAGCAGACAAAGCTGAG  20
            ||| ||| |||||||||||||
Sbjct  133  CGGAGAGAAGACAAAGCTGAG  113


>Erche06g031255.1.mRNA1.mrna1 gene=Erche06g031255.1.mRNA1
Length=660

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 19/21 (90%), Gaps = 1/21 (5%)
 Strand=Plus/Minus

Query  1    CGG-GAGCAGACAAAGCTGAG  20
            ||| ||| |||||||||||||
Sbjct  133  CGGAGAGAAGACAAAGCTGAG  113


>Erche05g017560.1.mRNA1.mrna1 gene=Erche05g017560.1.mRNA1
Length=1377

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  4    GAGCAGACAAAGCT  17
            ||||||||||||||
Sbjct  925  GAGCAGACAAAGCT  938


>Erche03g017480.1.mRNA1.mrna1 gene=Erche03g017480.1.mRNA1
Length=1071

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  3    GGAGCAGACAAAGC  16
            ||||||||||||||
Sbjct  484  GGAGCAGACAAAGC  497



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5