BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche04g007870.1.mRNA1.mrna1gene=Erche04g007870.1.mRNA1               28.8    0.23 
Erche04g007890.1.mRNA1.mrna1gene=Erche04g007890.1.mRNA1               27.0    0.84 


>Erche04g007870.1.mRNA1.mrna1 gene=Erche04g007870.1.mRNA1
Length=2742

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  5    TTCTTACTCACGGCA  19
            |||||||||||||||
Sbjct  232  TTCTTACTCACGGCA  246


 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  5     TTCTTACTCACGGCA  19
             |||||||||||||||
Sbjct  1489  TTCTTACTCACGGCA  1503


>Erche04g007890.1.mRNA1.mrna1 gene=Erche04g007890.1.mRNA1
Length=993

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  5    TTCTTACTCACGGC  18
            ||||||||||||||
Sbjct  238  TTCTTACTCACGGC  251



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5