BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009500.1.mRNA1.mrna1gene=Erche07g009500.1.mRNA1               38.1    4e-04
Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche03g032390.1.mRNA1.mrna1gene=Erche03g032390.1.mRNA1               38.1    4e-04
Erche06g029000.1.mRNA1.mrna1gene=Erche06g029000.1.mRNA1               30.7    0.065
Erche06g028170.1.mRNA1.mrna1gene=Erche06g028170.1.mRNA1               27.0    0.84 
Erche06g027060.1.mRNA1.mrna1gene=Erche06g027060.1.mRNA1               27.0    0.84 
Erche06g024790.1.mRNA1.mrna1gene=Erche06g024790.1.mRNA1               27.0    0.84 


>Erche07g009500.1.mRNA1.mrna1 gene=Erche07g009500.1.mRNA1
Length=1488

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    CTCCTTAAAGTCTTTGGCAT  20
            ||||||||||||||||||||
Sbjct  723  CTCCTTAAAGTCTTTGGCAT  704


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    CTCCTTAAAGTCTTTGGCAT  20
            ||||||||||||||||||||
Sbjct  642  CTCCTTAAAGTCTTTGGCAT  623


 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     CTCCTTAAAGTCTTTGGCAT  20
             ||||||||||||||||||||
Sbjct  7509  CTCCTTAAAGTCTTTGGCAT  7490


>Erche03g032390.1.mRNA1.mrna1 gene=Erche03g032390.1.mRNA1
Length=2571

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    CTCCTTAAAGTCTTTGGCAT  20
            ||||||||||||||||||||
Sbjct  726  CTCCTTAAAGTCTTTGGCAT  707


>Erche06g029000.1.mRNA1.mrna1 gene=Erche06g029000.1.mRNA1
Length=663

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  2   TCCTTAAAGTCTTTGG  17
           ||||||||||||||||
Sbjct  77  TCCTTAAAGTCTTTGG  92


>Erche06g028170.1.mRNA1.mrna1 gene=Erche06g028170.1.mRNA1
Length=2934

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  4     CTTAAAGTCTTTGG  17
             ||||||||||||||
Sbjct  1381  CTTAAAGTCTTTGG  1394


>Erche06g027060.1.mRNA1.mrna1 gene=Erche06g027060.1.mRNA1
Length=3018

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 17/18 (94%), Gaps = 1/18 (6%)
 Strand=Plus/Minus

Query  3     CCTTAAAGTCTTT-GGCA  19
             ||||||||||||| ||||
Sbjct  2782  CCTTAAAGTCTTTTGGCA  2765


>Erche06g024790.1.mRNA1.mrna1 gene=Erche06g024790.1.mRNA1
Length=1317

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  4    CTTAAAGTCTTTGG  17
            ||||||||||||||
Sbjct  205  CTTAAAGTCTTTGG  218



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5