BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche06g030400.1.mRNA1.mrna1gene=Erche06g030400.1.mRNA1               38.1    4e-04
Erche01g010350.1.mRNA1.mrna1gene=Erche01g010350.1.mRNA1               30.7    0.065
Erche08g013590.1.mRNA1.mrna1gene=Erche08g013590.1.mRNA1               28.8    0.23 
Erche05g018610.1.mRNA1.mrna1gene=Erche05g018610.1.mRNA1               28.8    0.23 
Erche01g041160.1.mRNA1.mrna1gene=Erche01g041160.1.mRNA1               28.8    0.23 
Erche08g017160.1.mRNA1.mrna1gene=Erche08g017160.1.mRNA1               27.0    0.84 
Erche08g013559.1.mRNA1.mrna1gene=Erche08g013559.1.mRNA1               27.0    0.84 
Erche08g013460.1.mRNA1.mrna1gene=Erche08g013460.1.mRNA1               27.0    0.84 
Erche05g030820.1.mRNA1.mrna1gene=Erche05g030820.1.mRNA1               27.0    0.84 
Erche04g025520.1.mRNA1.mrna1gene=Erche04g025520.1.mRNA1               27.0    0.84 
Erche01g047550.1.mRNA1.mrna1gene=Erche01g047550.1.mRNA1               27.0    0.84 
Erche01g042050.1.mRNA1.mrna1gene=Erche01g042050.1.mRNA1               27.0    0.84 


>Erche06g030400.1.mRNA1.mrna1 gene=Erche06g030400.1.mRNA1
Length=2955

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     GACCAATACTTGAAGACAAA  20
             ||||||||||||||||||||
Sbjct  1343  GACCAATACTTGAAGACAAA  1362


>Erche01g010350.1.mRNA1.mrna1 gene=Erche01g010350.1.mRNA1
Length=1497

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  1    GACCAATACTTGAAGACAA  19
            |||| ||||||||||||||
Sbjct  943  GACCGATACTTGAAGACAA  961


>Erche08g013590.1.mRNA1.mrna1 gene=Erche08g013590.1.mRNA1
Length=795

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  3    CCAATACTTGAAGACAAA  20
            |||| |||||||||||||
Sbjct  103  CCAAAACTTGAAGACAAA  86


>Erche05g018610.1.mRNA1.mrna1 gene=Erche05g018610.1.mRNA1
Length=1512

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  1     GACCAATACTTGAAGACA  18
             ||||||| ||||||||||
Sbjct  1363  GACCAATTCTTGAAGACA  1380


>Erche01g041160.1.mRNA1.mrna1 gene=Erche01g041160.1.mRNA1
Length=1512

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  1     GACCAATACTTGAAGACA  18
             ||||||| ||||||||||
Sbjct  1363  GACCAATTCTTGAAGACA  1380


>Erche08g017160.1.mRNA1.mrna1 gene=Erche08g017160.1.mRNA1
Length=1707

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  2     ACCAATACTTGAAG  15
             ||||||||||||||
Sbjct  1457  ACCAATACTTGAAG  1470


>Erche08g013559.1.mRNA1.mrna1 gene=Erche08g013559.1.mRNA1
Length=1185

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 17/18 (94%), Gaps = 1/18 (6%)
 Strand=Plus/Plus

Query  4     CAA-TACTTGAAGACAAA  20
             ||| ||||||||||||||
Sbjct  1164  CAAGTACTTGAAGACAAA  1181


>Erche08g013460.1.mRNA1.mrna1 gene=Erche08g013460.1.mRNA1
Length=1185

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 17/18 (94%), Gaps = 1/18 (6%)
 Strand=Plus/Plus

Query  4     CAA-TACTTGAAGACAAA  20
             ||| ||||||||||||||
Sbjct  1164  CAAGTACTTGAAGACAAA  1181


>Erche05g030820.1.mRNA1.mrna1 gene=Erche05g030820.1.mRNA1
Length=1011

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  5   AATACTTGAAGACA  18
           ||||||||||||||
Sbjct  60  AATACTTGAAGACA  47


>Erche04g025520.1.mRNA1.mrna1 gene=Erche04g025520.1.mRNA1
Length=297

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  3    CCAATACTTGAAGA  16
            ||||||||||||||
Sbjct  201  CCAATACTTGAAGA  214


>Erche01g047550.1.mRNA1.mrna1 gene=Erche01g047550.1.mRNA1
Length=1350

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  4     CAATACTTGAAGACAAA  20
             ||| |||||||||||||
Sbjct  1248  CAAGACTTGAAGACAAA  1232


>Erche01g042050.1.mRNA1.mrna1 gene=Erche01g042050.1.mRNA1
Length=1788

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    ATACTTGAAGACAA  19
            ||||||||||||||
Sbjct  945  ATACTTGAAGACAA  958



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5