BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g018590.1.mRNA1.mrna1gene=Erche07g018590.1.mRNA1               38.1    4e-04
Erche07g022039.1.mRNA1.mrna1gene=Erche07g022039.1.mRNA1               38.1    4e-04
Erche06g023060.1.mRNA1.mrna1gene=Erche06g023060.1.mRNA1               38.1    4e-04
Erche04g006780.1.mRNA1.mrna1gene=Erche04g006780.1.mRNA1               38.1    4e-04
Erche04g006870.1.mRNA1.mrna1gene=Erche04g006870.1.mRNA1               38.1    4e-04
Erche04g014450.1.mRNA1.mrna1gene=Erche04g014450.1.mRNA1               38.1    4e-04
Erche05g030550.1.mRNA1.mrna1gene=Erche05g030550.1.mRNA1               34.4    0.005
Erche04g006910.1.mRNA1.mrna1gene=Erche04g006910.1.mRNA1               32.5    0.018
Erche05g027590.1.mRNA1.mrna1gene=Erche05g027590.1.mRNA1               27.0    0.84 


>Erche07g018590.1.mRNA1.mrna1 gene=Erche07g018590.1.mRNA1
Length=660

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GGCTTACTAATTCTTGGATG  20
            ||||||||||||||||||||
Sbjct  412  GGCTTACTAATTCTTGGATG  393


>Erche07g022039.1.mRNA1.mrna1 gene=Erche07g022039.1.mRNA1
Length=1419

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GGCTTACTAATTCTTGGATG  20
            ||||||||||||||||||||
Sbjct  412  GGCTTACTAATTCTTGGATG  393


>Erche06g023060.1.mRNA1.mrna1 gene=Erche06g023060.1.mRNA1
Length=1098

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GGCTTACTAATTCTTGGATG  20
            ||||||||||||||||||||
Sbjct  388  GGCTTACTAATTCTTGGATG  369


>Erche04g006780.1.mRNA1.mrna1 gene=Erche04g006780.1.mRNA1
Length=1818

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GGCTTACTAATTCTTGGATG  20
            ||||||||||||||||||||
Sbjct  388  GGCTTACTAATTCTTGGATG  369


>Erche04g006870.1.mRNA1.mrna1 gene=Erche04g006870.1.mRNA1
Length=2760

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GGCTTACTAATTCTTGGATG  20
             ||||||||||||||||||||
Sbjct  1672  GGCTTACTAATTCTTGGATG  1653


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GGCTTACTAATTCTTGGATG  20
            ||||||||||||| ||||||
Sbjct  277  GGCTTACTAATTCCTGGATG  258


>Erche04g014450.1.mRNA1.mrna1 gene=Erche04g014450.1.mRNA1
Length=1470

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GGCTTACTAATTCTTGGATG  20
            ||||||||||||||||||||
Sbjct  388  GGCTTACTAATTCTTGGATG  369


>Erche05g030550.1.mRNA1.mrna1 gene=Erche05g030550.1.mRNA1
Length=873

 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  3    CTTACTAATTCTTGGATG  20
            ||||||||||||||||||
Sbjct  386  CTTACTAATTCTTGGATG  369


>Erche04g006910.1.mRNA1.mrna1 gene=Erche04g006910.1.mRNA1
Length=2280

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GGCTTACTAATTCTTGGATG  20
            |||||||||||||||| |||
Sbjct  262  GGCTTACTAATTCTTGAATG  243


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GGCTTACTAATTCTTGGATG  20
             |||||||||||||||| |||
Sbjct  1567  GGCTTACTAATTCTTGAATG  1548


>Erche05g027590.1.mRNA1.mrna1 gene=Erche05g027590.1.mRNA1
Length=1428

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  1     GGCTTACTAATTCT  14
             ||||||||||||||
Sbjct  1397  GGCTTACTAATTCT  1410



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5