BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche08g007620.1.mRNA1.mrna1gene=Erche08g007620.1.mRNA1               38.1    4e-04
Erche08g007270.1.mRNA1.mrna1gene=Erche08g007270.1.mRNA1               38.1    4e-04
Erche08g007290.1.mRNA1.mrna1gene=Erche08g007290.1.mRNA1               36.2    0.001
Erche05g013300.1.mRNA1.mrna1gene=Erche05g013300.1.mRNA1               30.7    0.065
Erche04g013840.1.mRNA1.mrna1gene=Erche04g013840.1.mRNA1               30.7    0.065
Erche01g045460.1.mRNA1.mrna1gene=Erche01g045460.1.mRNA1               30.7    0.065
Erche01g045600.1.mRNA1.mrna1gene=Erche01g045600.1.mRNA1               30.7    0.065
Erche01g045610.1.mRNA1.mrna1gene=Erche01g045610.1.mRNA1               30.7    0.065
Erche07g009410.1.mRNA1.mrna1gene=Erche07g009410.1.mRNA1               28.8    0.23 
Erche05g011940.1.mRNA1.mrna1gene=Erche05g011940.1.mRNA1               28.8    0.23 
Erche01g012860.1.mRNA1.mrna1gene=Erche01g012860.1.mRNA1               28.8    0.23 
Erche05g038320.1.mRNA1.mrna1gene=Erche05g038320.1.mRNA1               27.0    0.84 
Erche04g018080.1.mRNA1.mrna1gene=Erche04g018080.1.mRNA1               27.0    0.84 


>Erche08g007620.1.mRNA1.mrna1 gene=Erche08g007620.1.mRNA1
Length=1383

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GACGATTTCGCCACTTTCCA  20
            ||||||||||||||||||||
Sbjct  885  GACGATTTCGCCACTTTCCA  866


>Erche08g007270.1.mRNA1.mrna1 gene=Erche08g007270.1.mRNA1
Length=1413

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GACGATTTCGCCACTTTCCA  20
            ||||||||||||||||||||
Sbjct  915  GACGATTTCGCCACTTTCCA  896


>Erche08g007290.1.mRNA1.mrna1 gene=Erche08g007290.1.mRNA1
Length=3513

 Score = 36.2 bits (19),  Expect = 0.001
 Identities = 19/19 (100%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  2    ACGATTTCGCCACTTTCCA  20
            |||||||||||||||||||
Sbjct  917  ACGATTTCGCCACTTTCCA  899


 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  2     ACGATTTCGCCACTTTCCA  20
             ||||||| |||||||||||
Sbjct  3041  ACGATTTTGCCACTTTCCA  3023


>Erche05g013300.1.mRNA1.mrna1 gene=Erche05g013300.1.mRNA1
Length=1806

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  1    GACGATTTCGCCACTT  16
            ||||||||||||||||
Sbjct  322  GACGATTTCGCCACTT  337


>Erche04g013840.1.mRNA1.mrna1 gene=Erche04g013840.1.mRNA1
Length=1314

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  2    ACGATTTCGCCACTTTCCA  20
            |||||||||||| ||||||
Sbjct  926  ACGATTTCGCCAATTTCCA  908


>Erche01g045460.1.mRNA1.mrna1 gene=Erche01g045460.1.mRNA1
Length=1542

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  2     ACGATTTCGCCACTTTCCA  20
             |||||||||||| ||||||
Sbjct  1169  ACGATTTCGCCAATTTCCA  1151


>Erche01g045600.1.mRNA1.mrna1 gene=Erche01g045600.1.mRNA1
Length=2358

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  2    ACGATTTCGCCACTTTCCA  20
            |||||||||||| ||||||
Sbjct  815  ACGATTTCGCCAATTTCCA  797


 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  2     ACGATTTCGCCACTTTCCA  20
             |||||||||||| ||||||
Sbjct  1997  ACGATTTCGCCAATTTCCA  1979


>Erche01g045610.1.mRNA1.mrna1 gene=Erche01g045610.1.mRNA1
Length=333

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  2    ACGATTTCGCCACTTTCCA  20
            |||||||||||| ||||||
Sbjct  278  ACGATTTCGCCAATTTCCA  260


>Erche07g009410.1.mRNA1.mrna1 gene=Erche07g009410.1.mRNA1
Length=1104

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  3     CGATTTCGCCACTTT  17
             |||||||||||||||
Sbjct  1014  CGATTTCGCCACTTT  1028


>Erche05g011940.1.mRNA1.mrna1 gene=Erche05g011940.1.mRNA1
Length=1674

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 18/19 (95%), Gaps = 1/19 (5%)
 Strand=Plus/Minus

Query  2    ACGAT-TTCGCCACTTTCC  19
            ||||| |||||||||||||
Sbjct  758  ACGATATTCGCCACTTTCC  740


>Erche01g012860.1.mRNA1.mrna1 gene=Erche01g012860.1.mRNA1
Length=1236

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3    CGATTTCGCCACTTTCCA  20
            ||||||||||||| ||||
Sbjct  807  CGATTTCGCCACTATCCA  824


>Erche05g038320.1.mRNA1.mrna1 gene=Erche05g038320.1.mRNA1
Length=1488

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  3    CGATTTCGCCACTTTCC  19
            |||||| ||||||||||
Sbjct  432  CGATTTGGCCACTTTCC  448


>Erche04g018080.1.mRNA1.mrna1 gene=Erche04g018080.1.mRNA1
Length=15855

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  7      TTCGCCACTTTCCA  20
              ||||||||||||||
Sbjct  12095  TTCGCCACTTTCCA  12082



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5