BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche03g031840.1.mRNA1.mrna1gene=Erche03g031840.1.mRNA1               32.5    0.018
Erche03g032030.1.mRNA1.mrna1gene=Erche03g032030.1.mRNA1               32.5    0.018
Erche02g039880.1.mRNA1.mrna1gene=Erche02g039880.1.mRNA1               30.7    0.065
Erche03g034130.1.mRNA1.mrna1gene=Erche03g034130.1.mRNA1               27.0    0.84 


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     CTCACGTCCTTCCGATGAAC  20
             ||||||||||||||||||||
Sbjct  4608  CTCACGTCCTTCCGATGAAC  4589


>Erche03g031840.1.mRNA1.mrna1 gene=Erche03g031840.1.mRNA1
Length=1377

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    CTCACGTCCTTCCGATGAAC  20
            |||| |||||||||||||||
Sbjct  195  CTCATGTCCTTCCGATGAAC  176


>Erche03g032030.1.mRNA1.mrna1 gene=Erche03g032030.1.mRNA1
Length=666

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    CTCACGTCCTTCCGATGAAC  20
            |||| |||||||||||||||
Sbjct  195  CTCATGTCCTTCCGATGAAC  176


>Erche02g039880.1.mRNA1.mrna1 gene=Erche02g039880.1.mRNA1
Length=3147

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 19/20 (95%), Gaps = 1/20 (5%)
 Strand=Plus/Minus

Query  1   CTCACGTCCTTCCGATGAAC  20
           |||| |||||||||||||||
Sbjct  68  CTCA-GTCCTTCCGATGAAC  50


>Erche03g034130.1.mRNA1.mrna1 gene=Erche03g034130.1.mRNA1
Length=1425

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    CTCACGTCCTTCCGATGAAC  20
            |||| |||||||| ||||||
Sbjct  195  CTCATGTCCTTCCAATGAAC  176



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5