BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche06g023060.1.mRNA1.mrna1gene=Erche06g023060.1.mRNA1               38.1    4e-04
Erche05g030550.1.mRNA1.mrna1gene=Erche05g030550.1.mRNA1               38.1    4e-04
Erche04g006780.1.mRNA1.mrna1gene=Erche04g006780.1.mRNA1               38.1    4e-04
Erche04g006870.1.mRNA1.mrna1gene=Erche04g006870.1.mRNA1               38.1    4e-04
Erche04g006910.1.mRNA1.mrna1gene=Erche04g006910.1.mRNA1               38.1    4e-04
Erche07g018590.1.mRNA1.mrna1gene=Erche07g018590.1.mRNA1               36.2    0.001
Erche07g022039.1.mRNA1.mrna1gene=Erche07g022039.1.mRNA1               36.2    0.001
Erche04g014450.1.mRNA1.mrna1gene=Erche04g014450.1.mRNA1               30.7    0.065
Erche05g033740.1.mRNA1.mrna1gene=Erche05g033740.1.mRNA1               27.0    0.84 
Erche04g009980.1.mRNA1.mrna1gene=Erche04g009980.1.mRNA1               27.0    0.84 
Erche03g034010.1.mRNA1.mrna1gene=Erche03g034010.1.mRNA1               27.0    0.84 
Erche02g038840.1.mRNA1.mrna1gene=Erche02g038840.1.mRNA1               27.0    0.84 


>Erche06g023060.1.mRNA1.mrna1 gene=Erche06g023060.1.mRNA1
Length=1098

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TGTAGACCCTTTTGGTTAAC  20
            ||||||||||||||||||||
Sbjct  353  TGTAGACCCTTTTGGTTAAC  334


>Erche05g030550.1.mRNA1.mrna1 gene=Erche05g030550.1.mRNA1
Length=873

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TGTAGACCCTTTTGGTTAAC  20
            ||||||||||||||||||||
Sbjct  353  TGTAGACCCTTTTGGTTAAC  334


>Erche04g006780.1.mRNA1.mrna1 gene=Erche04g006780.1.mRNA1
Length=1818

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TGTAGACCCTTTTGGTTAAC  20
            ||||||||||||||||||||
Sbjct  353  TGTAGACCCTTTTGGTTAAC  334


>Erche04g006870.1.mRNA1.mrna1 gene=Erche04g006870.1.mRNA1
Length=2760

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TGTAGACCCTTTTGGTTAAC  20
            ||||||||||||||||||||
Sbjct  242  TGTAGACCCTTTTGGTTAAC  223


 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     TGTAGACCCTTTTGGTTAAC  20
             ||||||||||||||||||||
Sbjct  1637  TGTAGACCCTTTTGGTTAAC  1618


>Erche04g006910.1.mRNA1.mrna1 gene=Erche04g006910.1.mRNA1
Length=2280

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     TGTAGACCCTTTTGGTTAAC  20
             ||||||||||||||||||||
Sbjct  1532  TGTAGACCCTTTTGGTTAAC  1513


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TGTAGACCCTTTTGGTTAAC  20
            |||| |||||||||||||||
Sbjct  227  TGTAAACCCTTTTGGTTAAC  208


>Erche07g018590.1.mRNA1.mrna1 gene=Erche07g018590.1.mRNA1
Length=660

 Score = 36.2 bits (19),  Expect = 0.001
 Identities = 19/19 (100%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  1    TGTAGACCCTTTTGGTTAA  19
            |||||||||||||||||||
Sbjct  377  TGTAGACCCTTTTGGTTAA  359


>Erche07g022039.1.mRNA1.mrna1 gene=Erche07g022039.1.mRNA1
Length=1419

 Score = 36.2 bits (19),  Expect = 0.001
 Identities = 19/19 (100%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  1    TGTAGACCCTTTTGGTTAA  19
            |||||||||||||||||||
Sbjct  377  TGTAGACCCTTTTGGTTAA  359


>Erche04g014450.1.mRNA1.mrna1 gene=Erche04g014450.1.mRNA1
Length=1470

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  1    TGTAGACCCTTTTGGTTAA  19
            |||| ||||||||||||||
Sbjct  353  TGTAAACCCTTTTGGTTAA  335


>Erche05g033740.1.mRNA1.mrna1 gene=Erche05g033740.1.mRNA1
Length=1404

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  4    AGACCCTTTTGGTTAAC  20
            ||||||||| |||||||
Sbjct  350  AGACCCTTTGGGTTAAC  334


>Erche04g009980.1.mRNA1.mrna1 gene=Erche04g009980.1.mRNA1
Length=1950

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  4    AGACCCTTTTGGTT  17
            ||||||||||||||
Sbjct  518  AGACCCTTTTGGTT  531


>Erche03g034010.1.mRNA1.mrna1 gene=Erche03g034010.1.mRNA1
Length=3945

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  4     AGACCCTTTTGGTT  17
             ||||||||||||||
Sbjct  3799  AGACCCTTTTGGTT  3786


>Erche02g038840.1.mRNA1.mrna1 gene=Erche02g038840.1.mRNA1
Length=775

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  7    CCCTTTTGGTTAAC  20
            ||||||||||||||
Sbjct  626  CCCTTTTGGTTAAC  613



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5