BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=22
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche05g016400.1.mRNA1.mrna1gene=Erche05g016400.1.mRNA1               41.7    4e-05
Erche02g008560.1.mRNA1.mrna1gene=Erche02g008560.1.mRNA1               34.4    0.007
Erche02g025750.1.mRNA1.mrna1gene=Erche02g025750.1.mRNA1               28.8    0.31 


>Erche05g016400.1.mRNA1.mrna1 gene=Erche05g016400.1.mRNA1
Length=3396

 Score = 41.7 bits (22),  Expect = 4e-05
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  1     AGAAGAAGTGAGGCAAATACTC  22
             ||||||||||||||||||||||
Sbjct  1044  AGAAGAAGTGAGGCAAATACTC  1065


 Score = 36.2 bits (19),  Expect = 0.002
 Identities = 19/19 (100%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  4     AGAAGTGAGGCAAATACTC  22
             |||||||||||||||||||
Sbjct  2903  AGAAGTGAGGCAAATACTC  2921


>Erche02g008560.1.mRNA1.mrna1 gene=Erche02g008560.1.mRNA1
Length=1533

 Score = 34.4 bits (18),  Expect = 0.007
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  1     AGAAGAAGTGAGGCAAATACT  21
             ||||||||| |||||||||||
Sbjct  1038  AGAAGAAGTCAGGCAAATACT  1058


>Erche02g025750.1.mRNA1.mrna1 gene=Erche02g025750.1.mRNA1
Length=1575

 Score = 28.8 bits (15),  Expect = 0.31
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  2     GAAGAAGTGAGGCAA  16
             |||||||||||||||
Sbjct  1438  GAAGAAGTGAGGCAA  1424



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 148234224


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5