BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche04g006870.1.mRNA1.mrna1gene=Erche04g006870.1.mRNA1               38.1    4e-04
Erche07g011040.1.mRNA1.mrna1gene=Erche07g011040.1.mRNA1               28.8    0.23 
Erche05g009480.1.mRNA1.mrna1gene=Erche05g009480.1.mRNA1               28.8    0.23 
Erche04g001240.1.mRNA1.mrna1gene=Erche04g001240.1.mRNA1               28.8    0.23 
Erche01g035355.1.mRNA1.mrna1gene=Erche01g035355.1.mRNA1               28.8    0.23 
Erche01g035350.1.mRNA1.mrna1gene=Erche01g035350.1.mRNA1               28.8    0.23 
Erche08g002480.1.mRNA1.mrna1gene=Erche08g002480.1.mRNA1               27.0    0.84 
Erche06g023060.1.mRNA1.mrna1gene=Erche06g023060.1.mRNA1               27.0    0.84 
Erche04g006910.1.mRNA1.mrna1gene=Erche04g006910.1.mRNA1               27.0    0.84 
Erche04g014450.1.mRNA1.mrna1gene=Erche04g014450.1.mRNA1               27.0    0.84 
Erche02g035550.1.mRNA1.mrna1gene=Erche02g035550.1.mRNA1               27.0    0.84 
Erche01g007260.1.mRNA1.mrna1gene=Erche01g007260.1.mRNA1               27.0    0.84 
Erche01g003000.1.mRNA1.mrna1gene=Erche01g003000.1.mRNA1               27.0    0.84 


>Erche04g006870.1.mRNA1.mrna1 gene=Erche04g006870.1.mRNA1
Length=2760

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TCATCCTCAGAGCTTGTCAA  20
            ||||||||||||||||||||
Sbjct  695  TCATCCTCAGAGCTTGTCAA  676


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  1     TCATCCTCAGAGCTTGT  17
             |||||||| ||||||||
Sbjct  2090  TCATCCTCGGAGCTTGT  2074


>Erche07g011040.1.mRNA1.mrna1 gene=Erche07g011040.1.mRNA1
Length=561

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  5    CCTCAGAGCTTGTCA  19
            |||||||||||||||
Sbjct  302  CCTCAGAGCTTGTCA  316


>Erche05g009480.1.mRNA1.mrna1 gene=Erche05g009480.1.mRNA1
Length=957

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  1    TCATCCTCAGAGCTT  15
            |||||||||||||||
Sbjct  877  TCATCCTCAGAGCTT  863


>Erche04g001240.1.mRNA1.mrna1 gene=Erche04g001240.1.mRNA1
Length=594

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  4    TCCTCAGAGCTTGTC  18
            |||||||||||||||
Sbjct  517  TCCTCAGAGCTTGTC  503


>Erche01g035355.1.mRNA1.mrna1 gene=Erche01g035355.1.mRNA1
Length=1446

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  1     TCATCCTCAGAGCTT  15
             |||||||||||||||
Sbjct  1397  TCATCCTCAGAGCTT  1411


>Erche01g035350.1.mRNA1.mrna1 gene=Erche01g035350.1.mRNA1
Length=1533

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  1    TCATCCTCAGAGCTT  15
            |||||||||||||||
Sbjct  502  TCATCCTCAGAGCTT  488


>Erche08g002480.1.mRNA1.mrna1 gene=Erche08g002480.1.mRNA1
Length=1803

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  7   TCAGAGCTTGTCAA  20
           ||||||||||||||
Sbjct  35  TCAGAGCTTGTCAA  22


>Erche06g023060.1.mRNA1.mrna1 gene=Erche06g023060.1.mRNA1
Length=1098

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 19/21 (90%), Gaps = 1/21 (5%)
 Strand=Plus/Minus

Query  1    TCATCCTCAGAGCTTGT-CAA  20
            |||||||| |||||||| |||
Sbjct  806  TCATCCTCGGAGCTTGTACAA  786


>Erche04g006910.1.mRNA1.mrna1 gene=Erche04g006910.1.mRNA1
Length=2280

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  1     TCATCCTCAGAGCTTGT  17
             |||||||| ||||||||
Sbjct  1985  TCATCCTCGGAGCTTGT  1969


>Erche04g014450.1.mRNA1.mrna1 gene=Erche04g014450.1.mRNA1
Length=1470

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  1    TCATCCTCAGAGCTTGT  17
            |||||||| ||||||||
Sbjct  806  TCATCCTCGGAGCTTGT  790


>Erche02g035550.1.mRNA1.mrna1 gene=Erche02g035550.1.mRNA1
Length=8739

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  1     TCATCCTCAGAGCTTGT  17
             ||||||||||| |||||
Sbjct  5150  TCATCCTCAGAACTTGT  5134


>Erche01g007260.1.mRNA1.mrna1 gene=Erche01g007260.1.mRNA1
Length=1992

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  4     TCCTCAGAGCTTGT  17
             ||||||||||||||
Sbjct  1177  TCCTCAGAGCTTGT  1164


>Erche01g003000.1.mRNA1.mrna1 gene=Erche01g003000.1.mRNA1
Length=684

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  2    CATCCTCAGAGCTT  15
            ||||||||||||||
Sbjct  337  CATCCTCAGAGCTT  324



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5