BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche04g006780.1.mRNA1.mrna1gene=Erche04g006780.1.mRNA1               38.1    4e-04
Erche07g018590.1.mRNA1.mrna1gene=Erche07g018590.1.mRNA1               34.4    0.005
Erche07g022039.1.mRNA1.mrna1gene=Erche07g022039.1.mRNA1               34.4    0.005
Erche06g023060.1.mRNA1.mrna1gene=Erche06g023060.1.mRNA1               28.8    0.23 
Erche04g006910.1.mRNA1.mrna1gene=Erche04g006910.1.mRNA1               28.8    0.23 
Erche03g015040.1.mRNA1.mrna1gene=Erche03g015040.1.mRNA1               28.8    0.23 
Erche06g009120.1.mRNA1.mrna1gene=Erche06g009120.1.mRNA1               27.0    0.84 
Erche06g028500.1.mRNA1.mrna1gene=Erche06g028500.1.mRNA1               27.0    0.84 
Erche04g006870.1.mRNA1.mrna1gene=Erche04g006870.1.mRNA1               27.0    0.84 
Erche04g018350.1.mRNA1.mrna1gene=Erche04g018350.1.mRNA1               27.0    0.84 
Erche02g032790.1.mRNA1.mrna1gene=Erche02g032790.1.mRNA1               27.0    0.84 


>Erche04g006780.1.mRNA1.mrna1 gene=Erche04g006780.1.mRNA1
Length=1818

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    GCTAATATATTCCCTATTAG  20
            ||||||||||||||||||||
Sbjct  559  GCTAATATATTCCCTATTAG  578


>Erche07g018590.1.mRNA1.mrna1 gene=Erche07g018590.1.mRNA1
Length=660

 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  1    GCTAATATATTCCCTATT  18
            ||||||||||||||||||
Sbjct  583  GCTAATATATTCCCTATT  600


>Erche07g022039.1.mRNA1.mrna1 gene=Erche07g022039.1.mRNA1
Length=1419

 Score = 34.4 bits (18),  Expect = 0.005
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  1    GCTAATATATTCCCTATT  18
            ||||||||||||||||||
Sbjct  583  GCTAATATATTCCCTATT  600


>Erche06g023060.1.mRNA1.mrna1 gene=Erche06g023060.1.mRNA1
Length=1098

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  1    GCTAATATATTCCCTATT  18
            |||||||||||| |||||
Sbjct  559  GCTAATATATTCTCTATT  576


>Erche04g006910.1.mRNA1.mrna1 gene=Erche04g006910.1.mRNA1
Length=2280

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  1    GCTAATATATTCCCTATT  18
            |||||||||||| |||||
Sbjct  433  GCTAATATATTCTCTATT  450


 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  1     GCTAATATATTCCCTATT  18
             |||||||||||| |||||
Sbjct  1738  GCTAATATATTCTCTATT  1755


>Erche03g015040.1.mRNA1.mrna1 gene=Erche03g015040.1.mRNA1
Length=2223

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  3     TAATATATTCCCTATTAG  20
             |||||| |||||||||||
Sbjct  1198  TAATATTTTCCCTATTAG  1181


>Erche06g009120.1.mRNA1.mrna1 gene=Erche06g009120.1.mRNA1
Length=1161

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 17/18 (94%), Gaps = 1/18 (6%)
 Strand=Plus/Minus

Query  1    GCTAATATATTCCCTATT  18
            |||||||||||||| |||
Sbjct  596  GCTAATATATTCCC-ATT  580


>Erche06g028500.1.mRNA1.mrna1 gene=Erche06g028500.1.mRNA1
Length=3090

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  2     CTAATATATTCCCTATT  18
             ||||||| |||||||||
Sbjct  1081  CTAATATTTTCCCTATT  1065


>Erche04g006870.1.mRNA1.mrna1 gene=Erche04g006870.1.mRNA1
Length=2760

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     GCTAATATATTCCCTATTAG  20
             |||||||||||  |||||||
Sbjct  1843  GCTAATATATTATCTATTAG  1862


>Erche04g018350.1.mRNA1.mrna1 gene=Erche04g018350.1.mRNA1
Length=2757

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  6    TATATTCCCTATTA  19
            ||||||||||||||
Sbjct  859  TATATTCCCTATTA  846


>Erche02g032790.1.mRNA1.mrna1 gene=Erche02g032790.1.mRNA1
Length=3111

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  4    AATATATTCCCTATTAG  20
            |||||||||||| ||||
Sbjct  455  AATATATTCCCTCTTAG  439



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5