BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche03g032510.1.mRNA1.mrna1gene=Erche03g032510.1.mRNA1               30.7    0.065
Erche01g009970.1.mRNA1.mrna1gene=Erche01g009970.1.mRNA1               28.8    0.23 
Erche01g020140.1.mRNA1.mrna1gene=Erche01g020140.1.mRNA1               28.8    0.23 
Erche03g017700.1.mRNA1.mrna1gene=Erche03g017700.1.mRNA1               27.0    0.84 
Erche02g026750.1.mRNA1.mrna1gene=Erche02g026750.1.mRNA1               27.0    0.84 
Erche02g024810.1.mRNA1.mrna1gene=Erche02g024810.1.mRNA1               27.0    0.84 
Erche01g037610.1.mRNA1.mrna1gene=Erche01g037610.1.mRNA1               27.0    0.84 


>Erche03g032510.1.mRNA1.mrna1 gene=Erche03g032510.1.mRNA1
Length=1662

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  2     TGAAACCTGATATCAAGAG  20
             ||||||||| |||||||||
Sbjct  1622  TGAAACCTGTTATCAAGAG  1640


>Erche01g009970.1.mRNA1.mrna1 gene=Erche01g009970.1.mRNA1
Length=3195

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3     GAAACCTGATATCAAGAG  20
             ||||||||| ||||||||
Sbjct  2232  GAAACCTGAAATCAAGAG  2249


>Erche01g020140.1.mRNA1.mrna1 gene=Erche01g020140.1.mRNA1
Length=1134

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 18/19 (95%), Gaps = 1/19 (5%)
 Strand=Plus/Minus

Query  3    GAAAC-CTGATATCAAGAG  20
            ||||| |||||||||||||
Sbjct  676  GAAACTCTGATATCAAGAG  658


>Erche03g017700.1.mRNA1.mrna1 gene=Erche03g017700.1.mRNA1
Length=1023

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    TTGAAACCTGATATCAAGAG  20
            |||| |||||| ||||||||
Sbjct  181  TTGAGACCTGACATCAAGAG  200


>Erche02g026750.1.mRNA1.mrna1 gene=Erche02g026750.1.mRNA1
Length=7623

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  4     AAACCTGATATCAAGAG  20
             ||||||| |||||||||
Sbjct  1210  AAACCTGCTATCAAGAG  1226


>Erche02g024810.1.mRNA1.mrna1 gene=Erche02g024810.1.mRNA1
Length=1413

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  4    AAACCTGATATCAAGAG  20
            |||| ||||||||||||
Sbjct  315  AAACTTGATATCAAGAG  331


>Erche01g037610.1.mRNA1.mrna1 gene=Erche01g037610.1.mRNA1
Length=1203

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  1    TTGAAACCTGATAT  14
            ||||||||||||||
Sbjct  637  TTGAAACCTGATAT  650



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5