BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche03g008640.1.mRNA1.mrna1gene=Erche03g008640.1.mRNA1               38.1    4e-04
Erche05g002790.1.mRNA1.mrna1gene=Erche05g002790.1.mRNA1               27.0    0.84 
Erche03g035330.1.mRNA1.mrna1gene=Erche03g035330.1.mRNA1               27.0    0.84 


>Erche03g008640.1.mRNA1.mrna1 gene=Erche03g008640.1.mRNA1
Length=822

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    ATTGCGATTGCTCATCATCG  20
            ||||||||||||||||||||
Sbjct  250  ATTGCGATTGCTCATCATCG  231


>Erche05g002790.1.mRNA1.mrna1 gene=Erche05g002790.1.mRNA1
Length=948

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  4   GCGATTGCTCATCATCG  20
           |||||||| ||||||||
Sbjct  56  GCGATTGCCCATCATCG  72


>Erche03g035330.1.mRNA1.mrna1 gene=Erche03g035330.1.mRNA1
Length=3045

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  6   GATTGCTCATCATC  19
           ||||||||||||||
Sbjct  16  GATTGCTCATCATC  3



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5