BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009500.1.mRNA1.mrna1gene=Erche07g009500.1.mRNA1               38.1    4e-04
Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche03g032390.1.mRNA1.mrna1gene=Erche03g032390.1.mRNA1               32.5    0.018
Erche06g007560.1.mRNA1.mrna1gene=Erche06g007560.1.mRNA1               28.8    0.23 
Erche03g015230.2.mRNA1.mrna1gene=Erche03g015230.2.mRNA1               27.0    0.84 
Erche02g022790.1.mRNA1.mrna1gene=Erche02g022790.1.mRNA1               27.0    0.84 


>Erche07g009500.1.mRNA1.mrna1 gene=Erche07g009500.1.mRNA1
Length=1488

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    TCTGCCTCAACTCAAGGAGC  20
            ||||||||||||||||||||
Sbjct  903  TCTGCCTCAACTCAAGGAGC  922


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     TCTGCCTCAACTCAAGGAGC  20
             ||||||||||||||||||||
Sbjct  7689  TCTGCCTCAACTCAAGGAGC  7708


 Score = 36.2 bits (19),  Expect = 0.001
 Identities = 19/19 (100%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  2    CTGCCTCAACTCAAGGAGC  20
            |||||||||||||||||||
Sbjct  823  CTGCCTCAACTCAAGGAGC  841


 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  2     CTGCCTCAACTCAAGGAGC  20
             |||||||| ||||||||||
Sbjct  3631  CTGCCTCAGCTCAAGGAGC  3649


>Erche03g032390.1.mRNA1.mrna1 gene=Erche03g032390.1.mRNA1
Length=2571

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    TCTGCCTCAACTCAAGGAGC  20
            |||| |||||||||||||||
Sbjct  906  TCTGTCTCAACTCAAGGAGC  925


>Erche06g007560.1.mRNA1.mrna1 gene=Erche06g007560.1.mRNA1
Length=885

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  5    CCTCAACTCAAGGAG  19
            |||||||||||||||
Sbjct  384  CCTCAACTCAAGGAG  370


>Erche03g015230.2.mRNA1.mrna1 gene=Erche03g015230.2.mRNA1
Length=1401

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  3    TGCCTCAACTCAAG  16
            ||||||||||||||
Sbjct  638  TGCCTCAACTCAAG  651


>Erche02g022790.1.mRNA1.mrna1 gene=Erche02g022790.1.mRNA1
Length=2835

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  1     TCTGCCTCAACTCA  14
             ||||||||||||||
Sbjct  2107  TCTGCCTCAACTCA  2120



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5