BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche06g008220.1.mRNA1.mrna1gene=Erche06g008220.1.mRNA1               38.1    4e-04
Erche03g008640.1.mRNA1.mrna1gene=Erche03g008640.1.mRNA1               32.5    0.018
Erche04g002040.1.mRNA1.mrna1gene=Erche04g002040.1.mRNA1               30.7    0.065
Erche08g021470.1.mRNA1.mrna1gene=Erche08g021470.1.mRNA1               27.0    0.84 
Erche05g034820.1.mRNA1.mrna1gene=Erche05g034820.1.mRNA1               27.0    0.84 
Erche05g010370.1.mRNA1.mrna1gene=Erche05g010370.1.mRNA1               27.0    0.84 
Erche02g021200.1.mRNA1.mrna1gene=Erche02g021200.1.mRNA1               27.0    0.84 


>Erche06g008220.1.mRNA1.mrna1 gene=Erche06g008220.1.mRNA1
Length=1197

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1   AAGCCATGTTGTGTCGGAGA  20
           ||||||||||||||||||||
Sbjct  10  AAGCCATGTTGTGTCGGAGA  29


>Erche03g008640.1.mRNA1.mrna1 gene=Erche03g008640.1.mRNA1
Length=822

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1   AAGCCATGTTGTGTCGGAGA  20
           |||||||||||||| |||||
Sbjct  10  AAGCCATGTTGTGTGGGAGA  29


>Erche04g002040.1.mRNA1.mrna1 gene=Erche04g002040.1.mRNA1
Length=1863

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  2     AGCCATGTTGTGTCGGAGA  20
             ||||||||||| |||||||
Sbjct  1553  AGCCATGTTGTTTCGGAGA  1535


>Erche08g021470.1.mRNA1.mrna1 gene=Erche08g021470.1.mRNA1
Length=3456

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  5     CATGTTGTGTCGGA  18
             ||||||||||||||
Sbjct  1819  CATGTTGTGTCGGA  1832


>Erche05g034820.1.mRNA1.mrna1 gene=Erche05g034820.1.mRNA1
Length=729

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  1    AAGCCATGTTGTGTCGG  17
            ||||| |||||||||||
Sbjct  564  AAGCCCTGTTGTGTCGG  580


>Erche05g010370.1.mRNA1.mrna1 gene=Erche05g010370.1.mRNA1
Length=2337

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  2   AGCCATGTTGTGTC  15
           ||||||||||||||
Sbjct  20  AGCCATGTTGTGTC  7


>Erche02g021200.1.mRNA1.mrna1 gene=Erche02g021200.1.mRNA1
Length=873

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  6   ATGTTGTGTCGGAG  19
           ||||||||||||||
Sbjct  51  ATGTTGTGTCGGAG  38



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5