BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche04g006870.1.mRNA1.mrna1gene=Erche04g006870.1.mRNA1               38.1    4e-04
Erche07g002480.1.mRNA1.mrna1gene=Erche07g002480.1.mRNA1               28.8    0.23 
Erche04g004170.1.mRNA1.mrna1gene=Erche04g004170.1.mRNA1               28.8    0.23 
Erche04g012320.1.mRNA1.mrna1gene=Erche04g012320.1.mRNA1               28.8    0.23 
Erche07g018590.1.mRNA1.mrna1gene=Erche07g018590.1.mRNA1               27.0    0.84 
Erche06g033470.1.mRNA1.mrna1gene=Erche06g033470.1.mRNA1               27.0    0.84 
Erche05g023690.1.mRNA1.mrna1gene=Erche05g023690.1.mRNA1               27.0    0.84 
Erche04g006780.1.mRNA1.mrna1gene=Erche04g006780.1.mRNA1               27.0    0.84 
Erche03g022790.1.mRNA1.mrna1gene=Erche03g022790.1.mRNA1               27.0    0.84 


>Erche04g006870.1.mRNA1.mrna1 gene=Erche04g006870.1.mRNA1
Length=2760

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    CTGGTCGTTGTTCTTTTCCG  20
            ||||||||||||||||||||
Sbjct  494  CTGGTCGTTGTTCTTTTCCG  513


 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     CTGGTCGTTGTTCTTTTCCG  20
             ||||||||||||||||||||
Sbjct  1889  CTGGTCGTTGTTCTTTTCCG  1908


>Erche07g002480.1.mRNA1.mrna1 gene=Erche07g002480.1.mRNA1
Length=2316

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  5    TCGTTGTTCTTTTCC  19
            |||||||||||||||
Sbjct  370  TCGTTGTTCTTTTCC  356


>Erche04g004170.1.mRNA1.mrna1 gene=Erche04g004170.1.mRNA1
Length=606

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  4    GTCGTTGTTCTTTTC  18
            |||||||||||||||
Sbjct  327  GTCGTTGTTCTTTTC  313


>Erche04g012320.1.mRNA1.mrna1 gene=Erche04g012320.1.mRNA1
Length=594

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  4    GTCGTTGTTCTTTTC  18
            |||||||||||||||
Sbjct  315  GTCGTTGTTCTTTTC  301


>Erche07g018590.1.mRNA1.mrna1 gene=Erche07g018590.1.mRNA1
Length=660

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  1    CTGGTCGTTGTTCT  14
            ||||||||||||||
Sbjct  629  CTGGTCGTTGTTCT  642


>Erche06g033470.1.mRNA1.mrna1 gene=Erche06g033470.1.mRNA1
Length=1548

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  6     CGTTGTTCTTTTCC  19
             ||||||||||||||
Sbjct  1336  CGTTGTTCTTTTCC  1323


>Erche05g023690.1.mRNA1.mrna1 gene=Erche05g023690.1.mRNA1
Length=1572

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  4    GTCGTTGTTCTTTTCCG  20
            ||||||||| |||||||
Sbjct  924  GTCGTTGTTGTTTTCCG  908


>Erche04g006780.1.mRNA1.mrna1 gene=Erche04g006780.1.mRNA1
Length=1818

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    CTGGTCGTTGTTCTTTTCCG  20
            |||||| |||||||| ||||
Sbjct  605  CTGGTCATTGTTCTTATCCG  624


>Erche03g022790.1.mRNA1.mrna1 gene=Erche03g022790.1.mRNA1
Length=3456

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  5     TCGTTGTTCTTTTC  18
             ||||||||||||||
Sbjct  3197  TCGTTGTTCTTTTC  3184



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5