BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009500.1.mRNA1.mrna1gene=Erche07g009500.1.mRNA1               38.1    4e-04
Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche03g032390.1.mRNA1.mrna1gene=Erche03g032390.1.mRNA1               32.5    0.018
Erche08g014360.1.mRNA1.mrna1gene=Erche08g014360.1.mRNA1               27.0    0.84 
Erche05g002330.1.mRNA1.mrna1gene=Erche05g002330.1.mRNA1               27.0    0.84 
Erche01g024050.1.mRNA1.mrna1gene=Erche01g024050.1.mRNA1               27.0    0.84 
Erche01g035760.1.mRNA1.mrna1gene=Erche01g035760.1.mRNA1               27.0    0.84 
Erche01g035780.1.mRNA1.mrna1gene=Erche01g035780.1.mRNA1               27.0    0.84 
Erche01g035790.1.mRNA1.mrna1gene=Erche01g035790.1.mRNA1               27.0    0.84 


>Erche07g009500.1.mRNA1.mrna1 gene=Erche07g009500.1.mRNA1
Length=1488

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GAAGATTACAGATACTTCCA  20
            ||||||||||||||||||||
Sbjct  901  GAAGATTACAGATACTTCCA  882


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GAAGATTACAGATACTTCCA  20
            ||||||||||||||||||||
Sbjct  820  GAAGATTACAGATACTTCCA  801


 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GAAGATTACAGATACTTCCA  20
             ||||||||||||||||||||
Sbjct  7687  GAAGATTACAGATACTTCCA  7668


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GAAGATTACAGATACTTCCA  20
             ||||||| ||||||||||||
Sbjct  3628  GAAGATTGCAGATACTTCCA  3609


 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  1     GAAGATTACAGATACTTCC  19
             ||||||| |||||||||||
Sbjct  2161  GAAGATTGCAGATACTTCC  2143


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GAAGATTACAGATACTTCCA  20
             ||||||| || |||||||||
Sbjct  5251  GAAGATTGCATATACTTCCA  5232


>Erche03g032390.1.mRNA1.mrna1 gene=Erche03g032390.1.mRNA1
Length=2571

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GAAGATTACAGATACTTCCA  20
            |||||||||| |||||||||
Sbjct  904  GAAGATTACATATACTTCCA  885


>Erche08g014360.1.mRNA1.mrna1 gene=Erche08g014360.1.mRNA1
Length=690

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  2   AAGATTACAGATACTTC  18
           |||||||||||| ||||
Sbjct  45  AAGATTACAGATTCTTC  29


>Erche05g002330.1.mRNA1.mrna1 gene=Erche05g002330.1.mRNA1
Length=1284

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  3    AGATTACAGATACTTCC  19
            |||||||||| ||||||
Sbjct  573  AGATTACAGAAACTTCC  589


>Erche01g024050.1.mRNA1.mrna1 gene=Erche01g024050.1.mRNA1
Length=1878

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  1     GAAGATTACAGATACTT  17
             |||| ||||||||||||
Sbjct  1633  GAAGCTTACAGATACTT  1649


>Erche01g035760.1.mRNA1.mrna1 gene=Erche01g035760.1.mRNA1
Length=6111

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GAAGATTACAGATACTTCCA  20
            ||||||| || |||||||||
Sbjct  796  GAAGATTGCATATACTTCCA  777


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GAAGATTACAGATACTTCCA  20
             ||||||| || |||||||||
Sbjct  2323  GAAGATTGCATATACTTCCA  2304


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GAAGATTACAGATACTTCCA  20
             ||||||| || |||||||||
Sbjct  3577  GAAGATTGCATATACTTCCA  3558


>Erche01g035780.1.mRNA1.mrna1 gene=Erche01g035780.1.mRNA1
Length=789

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    GAAGATTACAGATACTTCCA  20
            ||||||| || |||||||||
Sbjct  379  GAAGATTGCATATACTTCCA  360


>Erche01g035790.1.mRNA1.mrna1 gene=Erche01g035790.1.mRNA1
Length=2337

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     GAAGATTACAGATACTTCCA  20
             ||||||| || |||||||||
Sbjct  1762  GAAGATTGCATATACTTCCA  1743



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5