BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche08g007620.1.mRNA1.mrna1gene=Erche08g007620.1.mRNA1               38.1    4e-04
Erche08g007270.1.mRNA1.mrna1gene=Erche08g007270.1.mRNA1               38.1    4e-04
Erche03g036131.1.mRNA1.mrna1gene=Erche03g036131.1.mRNA1               38.1    4e-04
Erche01g045460.1.mRNA1.mrna1gene=Erche01g045460.1.mRNA1               38.1    4e-04
Erche01g045600.1.mRNA1.mrna1gene=Erche01g045600.1.mRNA1               38.1    4e-04
Erche08g007290.1.mRNA1.mrna1gene=Erche08g007290.1.mRNA1               32.5    0.018
Erche04g013840.1.mRNA1.mrna1gene=Erche04g013840.1.mRNA1               32.5    0.018
Erche06g017880.1.mRNA1.mrna1gene=Erche06g017880.1.mRNA1               27.0    0.84 
Erche04g026400.1.mRNA1.mrna1gene=Erche04g026400.1.mRNA1               27.0    0.84 
Erche01g035370.1.mRNA1.mrna1gene=Erche01g035370.1.mRNA1               27.0    0.84 


>Erche08g007620.1.mRNA1.mrna1 gene=Erche08g007620.1.mRNA1
Length=1383

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AAAGTCAAGGTCAGCTTCTT  20
            ||||||||||||||||||||
Sbjct  364  AAAGTCAAGGTCAGCTTCTT  383


>Erche08g007270.1.mRNA1.mrna1 gene=Erche08g007270.1.mRNA1
Length=1413

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AAAGTCAAGGTCAGCTTCTT  20
            ||||||||||||||||||||
Sbjct  394  AAAGTCAAGGTCAGCTTCTT  413


>Erche03g036131.1.mRNA1.mrna1 gene=Erche03g036131.1.mRNA1
Length=912

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AAAGTCAAGGTCAGCTTCTT  20
            ||||||||||||||||||||
Sbjct  160  AAAGTCAAGGTCAGCTTCTT  179


>Erche01g045460.1.mRNA1.mrna1 gene=Erche01g045460.1.mRNA1
Length=1542

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AAAGTCAAGGTCAGCTTCTT  20
            ||||||||||||||||||||
Sbjct  748  AAAGTCAAGGTCAGCTTCTT  767


>Erche01g045600.1.mRNA1.mrna1 gene=Erche01g045600.1.mRNA1
Length=2358

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AAAGTCAAGGTCAGCTTCTT  20
            ||||||||||||||||||||
Sbjct  394  AAAGTCAAGGTCAGCTTCTT  413


 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     AAAGTCAAGGTCAGCTTCTT  20
             ||||||||||||||||||||
Sbjct  1576  AAAGTCAAGGTCAGCTTCTT  1595


>Erche08g007290.1.mRNA1.mrna1 gene=Erche08g007290.1.mRNA1
Length=3513

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AAAGTCAAGGTCAGCTTCTT  20
            ||||| ||||||||||||||
Sbjct  394  AAAGTAAAGGTCAGCTTCTT  413


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     AAAGTCAAGGTCAGCTTCTT  20
             |||||||||||||| |||||
Sbjct  2620  AAAGTCAAGGTCAGTTTCTT  2639


>Erche04g013840.1.mRNA1.mrna1 gene=Erche04g013840.1.mRNA1
Length=1314

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AAAGTCAAGGTCAGCTTCTT  20
            ||||| ||||||||||||||
Sbjct  394  AAAGTAAAGGTCAGCTTCTT  413


>Erche06g017880.1.mRNA1.mrna1 gene=Erche06g017880.1.mRNA1
Length=843

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  4    GTCAAGGTCAGCTTCTT  20
            |||||| ||||||||||
Sbjct  488  GTCAAGTTCAGCTTCTT  472


>Erche04g026400.1.mRNA1.mrna1 gene=Erche04g026400.1.mRNA1
Length=522

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  2    AAGTCAAGGTCAGCTTC  18
            |||||||| ||||||||
Sbjct  247  AAGTCAAGATCAGCTTC  231


>Erche01g035370.1.mRNA1.mrna1 gene=Erche01g035370.1.mRNA1
Length=1329

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AAAGTCAAGGTCAGCTTCTT  20
            || ||||||||||| |||||
Sbjct  412  AATGTCAAGGTCAGTTTCTT  431



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5