BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=1273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche06g022950.1.mRNA1.mrna1gene=Erche06g022950.1.mRNA1               206     4e-52


>Erche06g022950.1.mRNA1.mrna1 gene=Erche06g022950.1.mRNA1
Length=336

 Score = 206 bits (111),  Expect = 4e-52
 Identities = 137/149 (92%), Gaps = 3/149 (2%)
 Strand=Plus/Plus

Query  906   ATCGAAAAAAGAGAAAGCAAATCAAAAGAAGTTCAACCCATTAGCAAATCAAATCCTCAC  965
             || |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  1     ATGGAAACAAGAGAAAGCAAATCAAAAGAAGTTCAACCCATTAACAAATCAAATCCTCAC  60

Query  966   AAATTTGATTTAAACA--TATCCT-ATTATGACAAAGAAGAAACTCATCCCACCGAAATA  1022
             ||||||||||||||||  |||||| || | ||| |||||||||||| |||||||||||||
Sbjct  61    AAATTTGATTTAAACAAATATCCTCATGACGACGAAGAAGAAACTCCTCCCACCGAAATA  120

Query  1023  CCAGAACAAAAAGAGAGCAAAGCAAAAAA  1051
             |||||||||||||| |||| |||||||||
Sbjct  121   CCAGAACAAAAAGAAAGCATAGCAAAAAA  149



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 45986133024


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5