BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche08g006131.1.mRNA1.mrna1gene=Erche08g006131.1.mRNA1               38.1    4e-04
Erche08g006110.1.mRNA1.mrna1gene=Erche08g006110.1.mRNA1               38.1    4e-04
Erche08g016080.1.mRNA1.mrna1gene=Erche08g016080.1.mRNA1               27.0    0.84 
Erche05g039155.1.mRNA1.mrna1gene=Erche05g039155.1.mRNA1               27.0    0.84 
Erche05g036570.1.mRNA1.mrna1gene=Erche05g036570.1.mRNA1               27.0    0.84 
Erche03g003520.1.mRNA1.mrna1gene=Erche03g003520.1.mRNA1               27.0    0.84 
Erche03g011460.1.mRNA1.mrna1gene=Erche03g011460.1.mRNA1               27.0    0.84 
Erche03g020890.1.mRNA1.mrna1gene=Erche03g020890.1.mRNA1               27.0    0.84 
Erche01g043670.1.mRNA1.mrna1gene=Erche01g043670.1.mRNA1               27.0    0.84 


>Erche08g006131.1.mRNA1.mrna1 gene=Erche08g006131.1.mRNA1
Length=405

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1   ATAACCAAGTCAAGAATTAT  20
           ||||||||||||||||||||
Sbjct  38  ATAACCAAGTCAAGAATTAT  57


>Erche08g006110.1.mRNA1.mrna1 gene=Erche08g006110.1.mRNA1
Length=552

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    ATAACCAAGTCAAGAATTAT  20
            ||||||||||||||||||||
Sbjct  167  ATAACCAAGTCAAGAATTAT  186


>Erche08g016080.1.mRNA1.mrna1 gene=Erche08g016080.1.mRNA1
Length=1566

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  1    ATAACCAAGTCAAG  14
            ||||||||||||||
Sbjct  152  ATAACCAAGTCAAG  165


>Erche05g039155.1.mRNA1.mrna1 gene=Erche05g039155.1.mRNA1
Length=438

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  3    AACCAAGTCAAGAA  16
            ||||||||||||||
Sbjct  245  AACCAAGTCAAGAA  232


>Erche05g036570.1.mRNA1.mrna1 gene=Erche05g036570.1.mRNA1
Length=2154

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  1    ATAACCAAGTCAAG  14
            ||||||||||||||
Sbjct  686  ATAACCAAGTCAAG  673


>Erche03g003520.1.mRNA1.mrna1 gene=Erche03g003520.1.mRNA1
Length=1458

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  3   AACCAAGTCAAGAA  16
           ||||||||||||||
Sbjct  72  AACCAAGTCAAGAA  59


>Erche03g011460.1.mRNA1.mrna1 gene=Erche03g011460.1.mRNA1
Length=1074

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  2    TAACCAAGTCAAGA  15
            ||||||||||||||
Sbjct  930  TAACCAAGTCAAGA  943


>Erche03g020890.1.mRNA1.mrna1 gene=Erche03g020890.1.mRNA1
Length=1080

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  5   CCAAGTCAAGAATT  18
           ||||||||||||||
Sbjct  63  CCAAGTCAAGAATT  76


>Erche01g043670.1.mRNA1.mrna1 gene=Erche01g043670.1.mRNA1
Length=459

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  3    AACCAAGTCAAGAA  16
            ||||||||||||||
Sbjct  404  AACCAAGTCAAGAA  391



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5