BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009500.1.mRNA1.mrna1gene=Erche07g009500.1.mRNA1               38.1    4e-04
Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche03g032390.1.mRNA1.mrna1gene=Erche03g032390.1.mRNA1               38.1    4e-04
Erche07g009030.1.mRNA1.mrna1gene=Erche07g009030.1.mRNA1               28.8    0.23 


>Erche07g009500.1.mRNA1.mrna1 gene=Erche07g009500.1.mRNA1
Length=1488

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TTGACTTGCACTAGGTTGAT  20
            ||||||||||||||||||||
Sbjct  221  TTGACTTGCACTAGGTTGAT  202


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TTGACTTGCACTAGGTTGAT  20
            ||||||||||||||||||||
Sbjct  140  TTGACTTGCACTAGGTTGAT  121


 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     TTGACTTGCACTAGGTTGAT  20
             ||||||||||||||||||||
Sbjct  7007  TTGACTTGCACTAGGTTGAT  6988


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  7     TGCACTAGGTTGAT  20
             ||||||||||||||
Sbjct  2942  TGCACTAGGTTGAT  2929


>Erche03g032390.1.mRNA1.mrna1 gene=Erche03g032390.1.mRNA1
Length=2571

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    TTGACTTGCACTAGGTTGAT  20
            ||||||||||||||||||||
Sbjct  221  TTGACTTGCACTAGGTTGAT  202


>Erche07g009030.1.mRNA1.mrna1 gene=Erche07g009030.1.mRNA1
Length=2865

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  1     TTGACTTGCACTAGG  15
             |||||||||||||||
Sbjct  1200  TTGACTTGCACTAGG  1186



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5