BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche07g009500.1.mRNA1.mrna1gene=Erche07g009500.1.mRNA1               27.0    0.84 
Erche07g017730.1.mRNA1.mrna1gene=Erche07g017730.1.mRNA1               27.0    0.84 
Erche01g035780.1.mRNA1.mrna1gene=Erche01g035780.1.mRNA1               27.0    0.84 


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     AGTATAACGAGTTAGCTGAG  20
             ||||||||||||||||||||
Sbjct  7769  AGTATAACGAGTTAGCTGAG  7788


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  1     AGTATAACGAGTTAGCT  17
             |||||||||||||||||
Sbjct  3710  AGTATAACGAGTTAGCT  3726


 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AGTATAACGAGTTAGCTGAG  20
            ||||||| ||||||| ||||
Sbjct  902  AGTATAAAGAGTTAGTTGAG  921


>Erche07g009500.1.mRNA1.mrna1 gene=Erche07g009500.1.mRNA1
Length=1488

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     AGTATAACGAGTTAGCTGAG  20
             ||||||| ||||||| ||||
Sbjct  983   AGTATAAAGAGTTAGTTGAG  1002


>Erche07g017730.1.mRNA1.mrna1 gene=Erche07g017730.1.mRNA1
Length=3381

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  2    GTATAACGAGTTAGCTG  18
            ||||||||||||| |||
Sbjct  366  GTATAACGAGTTAACTG  382


>Erche01g035780.1.mRNA1.mrna1 gene=Erche01g035780.1.mRNA1
Length=789

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AGTATAACGAGTTAGCTGAG  20
            || |||||||||||| ||||
Sbjct  461  AGAATAACGAGTTAGTTGAG  480



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5