BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche07g009500.1.mRNA1.mrna1gene=Erche07g009500.1.mRNA1               38.1    4e-04
Erche07g009480.1.mRNA1.mrna1gene=Erche07g009480.1.mRNA1               38.1    4e-04
Erche03g032390.1.mRNA1.mrna1gene=Erche03g032390.1.mRNA1               32.5    0.018
Erche01g038250.1.mRNA1.mrna1gene=Erche01g038250.1.mRNA1               30.7    0.065
Erche05g030840.1.mRNA1.mrna1gene=Erche05g030840.1.mRNA1               28.8    0.23 
Erche04g010300.1.mRNA1.mrna1gene=Erche04g010300.1.mRNA1               28.8    0.23 
Erche04g016510.1.mRNA1.mrna1gene=Erche04g016510.1.mRNA1               28.8    0.23 
Erche07g000640.1.mRNA1.mrna1gene=Erche07g000640.1.mRNA1               27.0    0.84 


>Erche07g009500.1.mRNA1.mrna1 gene=Erche07g009500.1.mRNA1
Length=1488

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    ATCAAGATGAGTGCCTTAAA  20
            ||||||||||||||||||||
Sbjct  818  ATCAAGATGAGTGCCTTAAA  837


>Erche07g009480.1.mRNA1.mrna1 gene=Erche07g009480.1.mRNA1
Length=8238

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    ATCAAGATGAGTGCCTTAAA  20
            ||||||||||||||||||||
Sbjct  737  ATCAAGATGAGTGCCTTAAA  756


 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     ATCAAGATGAGTGCCTTAAA  20
             ||||||||||||||||||||
Sbjct  7604  ATCAAGATGAGTGCCTTAAA  7623


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     ATCAAGATGAGTGCCTTAAA  20
             ||||||||||||| ||||||
Sbjct  2078  ATCAAGATGAGTGTCTTAAA  2097


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     ATCAAGATGAGTGCCTTAAA  20
             ||||||||||||| ||||||
Sbjct  3545  ATCAAGATGAGTGTCTTAAA  3564


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     ATCAAGATGAGTGCCTTAAA  20
             ||||||| ||||||||||||
Sbjct  5168  ATCAAGACGAGTGCCTTAAA  5187


>Erche03g032390.1.mRNA1.mrna1 gene=Erche03g032390.1.mRNA1
Length=2571

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    ATCAAGATGAGTGCCTTAAA  20
            ||||||||||||| ||||||
Sbjct  821  ATCAAGATGAGTGTCTTAAA  840


>Erche01g038250.1.mRNA1.mrna1 gene=Erche01g038250.1.mRNA1
Length=7332

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 19/20 (95%), Gaps = 1/20 (5%)
 Strand=Plus/Plus

Query  1     ATCA-AGATGAGTGCCTTAA  19
             |||| |||||||||||||||
Sbjct  3331  ATCATAGATGAGTGCCTTAA  3350


>Erche05g030840.1.mRNA1.mrna1 gene=Erche05g030840.1.mRNA1
Length=4344

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  1     ATCAAGATGAGTGCC  15
             |||||||||||||||
Sbjct  2022  ATCAAGATGAGTGCC  2008


>Erche04g010300.1.mRNA1.mrna1 gene=Erche04g010300.1.mRNA1
Length=2220

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  1    ATCAAGATGAGTGCC  15
            |||||||||||||||
Sbjct  594  ATCAAGATGAGTGCC  580


>Erche04g016510.1.mRNA1.mrna1 gene=Erche04g016510.1.mRNA1
Length=1653

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  1   ATCAAGATGAGTGCC  15
           |||||||||||||||
Sbjct  90  ATCAAGATGAGTGCC  76


>Erche07g000640.1.mRNA1.mrna1 gene=Erche07g000640.1.mRNA1
Length=1272

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  1    ATCAAGATGAGTGC  14
            ||||||||||||||
Sbjct  729  ATCAAGATGAGTGC  716



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5