BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Contig16g000540.1.mRNA1gene=Contig16g000540.1                         963     0.0  


>Contig16g000540.1.mRNA1 gene=Contig16g000540.1
Length=3093

 Score = 963 bits (521),  Expect = 0.0
 Identities = 538/545 (99%), Gaps = 5/545 (1%)
 Strand=Plus/Plus

Query  1    AAAGCATTTATTAAGAAAAATAGAGAAGCTTAATACAAAGGCGGAAAAAGAAATCATAAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  45   AAAGCATTTATTAAGAAAAATAGAGAAGCTTAATACAAAGGCGGAAAAAGAAATCATAAT  104

Query  61   AACTTGGTCCCGGGCATCGTGGGCGAACGACGGGAATTGAACCCGCGATGGTGAATTCAC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  105  AACTTGGTCCCGGGCATCGTGGGCGAACGACGGGAATTGAACCCGCGATGGTGAATTCAC  164

Query  121  AATCCACTGCCTTAATCCACTTGGCTACATCCGCCC-----CTACTCTACTATAATCTAT  175
            ||||||||||||||||||||||||||||||||||||     |||||||||||||||||||
Sbjct  165  AATCCACTGCCTTAATCCACTTGGCTACATCCGCCCCTACTCTACTCTACTATAATCTAT  224

Query  176  TCTTTTTTGTATTGTCTAAAATAAAAACACATAGATTTCAATAAAAAAGGTAGAAAATTC  235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  225  TCTTTTTTGTATTGTCTAAAATAAAAACACATAGATTTCAATAAAAAAGGTAGAAAATTC  284

Query  236  CACCTTACTTTTTTTCTAAAGTAAAAAATTATAGTAGTACTTTTATATTAATATAAAAGA  295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  285  CACCTTACTTTTTTTCTAAAGTAAAAAATTATAGTAGTACTTTTATATTAATATAAAAGA  344

Query  296  AAAATATGATACTCTATAAAATCAAAATTTGCTCGTTTTTATAGAAAAAAAACGAGCAAT  355
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  345  AAAATATGATACTCTATAAAATAAAAATTTGCTCGTTTTTATAGAAAAAAAACGAGCAAT  404

Query  356  ATAAGCCTTCTTTTTAATTTAAAAAAGGCTTATATTGCTCGTTTTTTACTAAACTAGATC  415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  405  ATAAGCCTTCTTTTTAATTTAAAAAAGGCTTATATTGCTCGTTTTTTACTAAACTAGATC  464

Query  416  TAGACTAACACTCTAACACTAAGGAATTATCCGTTTGTAGACGGAGCCTCAACAGCAGCT  475
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  465  TAGACTAACACTCTAACACTAAGGAATTATCCGTTTGTAGATGGAGCCTCAACAGCAGCT  524

Query  476  AGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCA  535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  525  AGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCA  584

Query  536  CGGTT  540
            |||||
Sbjct  585  CGGTT  589


 Score = 91.6 bits (49),  Expect = 5e-18
 Identities = 58/62 (94%), Gaps = 2/62 (3%)
 Strand=Plus/Minus

Query  342  AAAAAACGAGCAATATAAGCCTTCTTTTTAATTTAAAA-AAGGCTTATATTGCTCGTTTT  400
            ||||||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||
Sbjct  451  AAAAAACGAGCAATATAAGCCTT-TTTTAAATTAAAAAGAAGGCTTATATTGCTCGTTTT  393

Query  401  TT  402
            ||
Sbjct  392  TT  391



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 19029028392


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5